Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1769 ATGCCGTCCCGCTGCGCAATTTGCTGCGAGTTGCTGATCGCCGTCTTGCTCCCTCCACTCGGAGTTTGCTTGCGCCATGGTTGCTGCACTGTTGAATTCATCATCTGCTTGCTACTTACTATTCTGGGCTATATCCCTGGTATAATTTATGCCCTCTATGCGATTATCTTTATTGATCGTGATCAGTACTTTGATGAATCTAGGCGTCCTCTGTATGCACCAGGACAACAGTACTGA 237 0.4768 MPSRCAICCELLIAVLLPPLGVCLRHGCCTVEFIICLLLTILGYIPGIIYALYAIIFIDRDQYFDESRRPLYAPGQQY* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1769 78 Pfam Proteolipid membrane potential modulator 9 55 IPR000612 GO:0016021
Lja4g1769 78 PANTHER BNAA03G50460D PROTEIN 1 73 - -
Lja4g1769 78 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 1 73 IPR000612 GO:0016021
Lja4g1769 78 ProSitePatterns Uncharacterized protein family UPF0057 signature. 12 27 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1769 Lja-Chr4 17144628 17145468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1769 1 72 RCI2 Gene Family AT4G28088 73.611 4.89e-38 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1769 - - lja:Lj0g3v0097159.1 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1769 4 17144628 17145468 Lja4g1769 4 17144628 17145468 ECH