Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1756 ATGTGTTTGTTAAGATTGACAATGTTTTTAATTTTCTTTCTAGAGATTGTTTCTACTAGAGTCTGTGGTGAGGAAGAACATGCAGGCCTTGTGAATGATAAAAAAAACTCTCTAGAGAATTGGAAGTCACAGGGAGTTCATGTTTGTGATTGGTCTGGTGTCAGATGCAACAATGCAAGTGACAGGATCATAGAGATTGATCTCAGTGGAAGGTTACTAGGAGGCACCATTTCCCCTGCTCTTGCTAACCTCTCTTTCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTTGTGGGTCACATTCCTAAAGAGCTAGGAAATTTAGTTCACCTTGAACAACTCAGTTTATCAGGGAATTTTCTTGAAGGAAGCATTCCCTCTGAGTTTGGTTCACTTCACAACTTGTACTACCTTGACATGGGAAGCAACCATCTTGAGGGAGAGATTCCCCCATCACTTTTCCACAATGTGACTTCATTGAGCTACATAGACCTTTCTAATAACTCTTTAGGGGGGAAAATCCCCTTGAACAATGAGTTTATCCTTAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACCATCTTGTTGGCCAAGTTCCTTTAGCTCTTTCTAACTCTACCAAGCTTAAATGGCTTGACTTGGAGTCAAATATGCTGAGTGGAGAGCTTCCATCTGAGATTGTTCATAATTTTCCACAATTACAATTCCTCTACTTATCATATAACCACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTGCTTCCTTGATGAACTTATCTAATATTCAAGAACTCGAATTGGCGGGAAACAAACTCGGTGGGAAGCTGCCTCCTATTATTGGTGATCTTCCTGCAAGCCTGCAACAACTTCACCTAGAAGAAAACCTCATACATGGCTCTATACCTCCACATATTGCCAACCTTTTCAACCTTACTTTTTTAGAGTTGTCTAGTAACCTAATAAATGGAACAATCCCTCACAGCCTCTGCAAGATGGGTAGGTTAGAGAGAATTTTCATGTCAAATAACTCACTATCTGGTGAGATTCCTTCAACCCTTGGTGACATCAAGCATCTGGGTCTTCTAGATTTGTCTAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAACTCTCTCCCAGTTAAGAAGGCTTCTACTTCATGACAACCAGCTTTCAGGAACAATCCCACTGAGCCTGGGAAAATGTGTCAATTTGGAAATTCTAGACTTGTCTCACAACAACATCACAGGGGTGATTCCTGCAGAAGTTGCAGCCTTGACTAGCTTGAAACTATACTTGAATTTATCAAACAATGACTTGCATGGGCCTTTACCATTAGAACTCAGCAAAATGAACATGGTGTTGGCTATTGATGTATCCATGAACAATCTCTCTGGCAGAATCCTGCCGCAGCTGGAAAATTGCATAGCACTAGAGTACCTCAACCTTTCTGGGAATGTCTCAAACAATGGTGCATTTTCATCACTGACCATAGACTCTTTCCTGGGAAATGATGGTCTCTGTGGCCAGGTTAAAGGCATGAAGTACTGTCATAGGAAACACAGTTACCATTTGGTGTTCTTGTTAGTTCCTGTGTTACTCTTTGGCACCCCTCTAATGTGCATGTGTAGGTCTTCCATGGTAATCAAGTCAAAAGTGAAGAAGAGGTCAGAAATTGTTAGTAGAGGTGACTTGGAGGATGGAGAGGAAATAGAAGAGCTCAGTTACCCAAGAATTTCATATAGAGAACTTAAAGAAGCCACTGGAGGATTCAGTGCTTCAAGACTAATCGGTTCAGGCCGGTTTGGACGGGTCTACAAAGGAGTCCTCCTAGATAGCACAAGAGTAGCAGTGAAGGTTTTAGATACAACACAAGCTAGTGAGATATCAAGGAGCTTTAGAAGGGAATGTCAAATCCTGAGAAAGATCAGGCACAGGAATTTAATAAGGATCATCACAATTTGCAGTAAACCAGAATTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGGCACCTATATCCAAGCCACGAGTTATGCCAGAGATTGGATGTGGTTCAATTGGTGAGAATCTGCAGTGATGTAGCTGAGGGAATGTCCTATTTGCACCATTACTCTCCCGTGAAAGTGGTGCACTGTGATCTTAAACCAAGCAATATACTCCTTGATCATGATCTTACAGCTTTGGTCACTGATTTTGGAATTTCAAGGCTTCTAAAAGATGATGAGAGTGTATCCACCAGTAACTCAACATCTTTCAGTTCTACAGATGGTTTGCTATGCGGATCTGTTGGCTACATAGCTCCTGAGTATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTGATTCTGTTAGAAATGGTGACAGGTAGGCGCCCAACAGATGTACTGATCCATGAAGGTTCTTGCTTGCGTGAGTGGGTTAAGAGACAATACCCTCAGCCAGAGAAGCTTGAAAACATTGTTGAACAAGCACTTCAAAGGTGCACTCCTTCTGGGGTGCCAAGCTATCATAACAAAATTTGGAAACAAGTTATATTGGAACTCATTGAGCTGGGGCTGCTCTGCACAATGCAGGATCCTTCAACAAGACCAAGCATGGCTGATGTAGCCCAAGAGATGGGGAGGTTGAAGGACTACCTCAGTAATACTCTCAGCAGTGAAGACACTTCAGTTGAAAAAGAGAATAATTAG 2742 0.4165 MCLLRLTMFLIFFLEIVSTRVCGEEEHAGLVNDKKNSLENWKSQGVHVCDWSGVRCNNASDRIIEIDLSGRLLGGTISPALANLSFLQILDLSGNFFVGHIPKELGNLVHLEQLSLSGNFLEGSIPSEFGSLHNLYYLDMGSNHLEGEIPPSLFHNVTSLSYIDLSNNSLGGKIPLNNEFILKELRFLLLWSNHLVGQVPLALSNSTKLKWLDLESNMLSGELPSEIVHNFPQLQFLYLSYNHFVSHDGNTNLEPFFASLMNLSNIQELELAGNKLGGKLPPIIGDLPASLQQLHLEENLIHGSIPPHIANLFNLTFLELSSNLINGTIPHSLCKMGRLERIFMSNNSLSGEIPSTLGDIKHLGLLDLSRNKLSGSIPDSFATLSQLRRLLLHDNQLSGTIPLSLGKCVNLEILDLSHNNITGVIPAEVAALTSLKLYLNLSNNDLHGPLPLELSKMNMVLAIDVSMNNLSGRILPQLENCIALEYLNLSGNVSNNGAFSSLTIDSFLGNDGLCGQVKGMKYCHRKHSYHLVFLLVPVLLFGTPLMCMCRSSMVIKSKVKKRSEIVSRGDLEDGEEIEELSYPRISYRELKEATGGFSASRLIGSGRFGRVYKGVLLDSTRVAVKVLDTTQASEISRSFRRECQILRKIRHRNLIRIITICSKPEFKALVLPLMPNGSLERHLYPSHELCQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDHDLTALVTDFGISRLLKDDESVSTSNSTSFSSTDGLLCGSVGYIAPEYGMGKHASTEGDVYSFGVILLEMVTGRRPTDVLIHEGSCLREWVKRQYPQPEKLENIVEQALQRCTPSGVPSYHNKIWKQVILELIELGLLCTMQDPSTRPSMADVAQEMGRLKDYLSNTLSSEDTSVEKENN* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1756 913 SUPERFAMILY RNI-like 65 350 - -
Lja4g1756 913 PANTHER OS04G0122200 PROTEIN 488 894 - -
Lja4g1756 913 Gene3D Ribonuclease Inhibitor 182 525 IPR032675 -
Lja4g1756 913 SUPERFAMILY L domain-like 256 515 - -
Lja4g1756 913 Pfam Leucine Rich Repeat 410 428 IPR001611 GO:0005515
Lja4g1756 913 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Lja4g1756 913 Gene3D Transferase(Phosphotransferase) domain 1 674 912 - -
Lja4g1756 913 Gene3D Phosphorylase Kinase; domain 1 569 672 - -
Lja4g1756 913 CDD STKc_IRAK 603 893 - -
Lja4g1756 913 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Lja4g1756 913 ProSiteProfiles Protein kinase domain profile. 597 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1756 913 ProSiteProfiles Leucine-rich repeat profile. 410 431 IPR001611 GO:0005515
Lja4g1756 913 SMART LRR_typ_2 360 383 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 312 336 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 384 408 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 263 287 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 108 131 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 84 107 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 132 156 IPR003591 -
Lja4g1756 913 SMART LRR_typ_2 409 432 IPR003591 -
Lja4g1756 913 PANTHER OS04G0122200 PROTEIN 28 492 - -
Lja4g1756 913 Pfam Leucine rich repeat 87 145 IPR001611 GO:0005515
Lja4g1756 913 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Lja4g1756 913 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 488 894 - -
Lja4g1756 913 Pfam Leucine rich repeat N-terminal domain 30 57 IPR013210 -
Lja4g1756 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Lja4g1756 913 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 28 492 - -
Lja4g1756 913 SUPERFAMILY Protein kinase-like (PK-like) 579 888 IPR011009 -
Lja4g1756 913 Pfam Protein kinase domain 599 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1756 913 SMART serkin_6 597 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1756 Lja-Chr4 17028038 17031633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1756 33 895 Receptor kinase-like Gene Family AT3G47570 35.396 1.87e-152 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja4g1756 Pkinase 5.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1756 - - mnt:21397106 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1756 4 17028038 17031633 Lja4g1756 4 17028038 17031633 ECH