Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1745 ATGGTTATGGTTATGGTTATGGTTATGGTTATGGTTATGGTTATGGTTATGTCTCTCAACTGCCTCCTCCTCCTCCTACTTTACTTCCTCCTCTCACGTGAGGCTCTCTGCTCCGCCTTCTCCGAGCCTCGAAACCCCGAAGTGGAGGCTTTGATGGCCATAAAGGAAGCTCTCAATGATCCACACGCTGTTCTCAGCAACTGGGACGATTATTCTGTTGATCCTTGCAGTTGGACCATGATTACTTGCTCTTCTGATTACCTTGTTACAGCTCTGGGAGCACCGAGTCAATCTCTCTCTGGAACTTTGTCCCCTGCAATTGGAAATCTCACAAACCTTCGACAAGTATTATTGCAGAACAACAATATCTCAGGCAAAATCCCACCGGAACTTGGAAACCTTCCCAAGCTTCAGACCTTAGATCTCTCCAATAACCGGTTCTCTGGCTTGATTCCACCCTCCCTGAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAATAACAATAGCTTGTCTGGACCATTTCCTGTCTCACTGGCCAAAATCCCACAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCCAGGTCATTCAATATTGTGGGGAATCCATTAGTTTGTAAAAGCAGTTCTACTGAAGGTTGCTCTGGATCAGCAACCCTCATGCCCATTTCTTTCTCTCAACCATCATCAGAAGGAAGAGAAAGGTCTAAAAGACTAGCAATTGCTCTTGGGGTCAGCTTTAGTTGTGTTTCTCTCGTTGTCTTGTTTTTTGGGCACTTATGGTATAGAAAGAGGAGACAACATGGAGCCATCCTGTATATCGATGATTGTAAGGAAGAAGGAGTTGGTAACCTGGGAAATCTAAAGAAATTCACATTCAAAGAGCTCCAACGTGCAACTGATAACTTCAGCACCAAGAATATACTTGGTGCTGGAGGGTTTGGCAATGTTTATAAAGGGAAGCTTGGAGATGGTATAATGGTGGCAGTGAAAAGGCTGAAAGATGTAACTGGTAGTGCTGGCGAATCACAGTTCCAAACAGAATTGGAGATGATCAGCTTGGCGGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTGATGAAAAACTTCTGGTTTATCCCTACATGTCTAATGGCAGTGTGGTCTCCAGGCTTAGAGGGAAACCAGCTTTAGATTGGAATGCAAGAAAGAGGATAGCAATTGGAGCTGCTAGAGGCCTTGTCTATCTGCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTGAAAGCTGCGAATGTGCTTCTAGATGACTATTGTGAAGCTGTTCTTGGTGATTTCGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCAGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATATGGTTTCGGTATTCTCTTATTAGAGCTCATAACCGGAATGACAGCTCTCGAGTTCGGGAAAACGGTGAATCAGAAAGGAGCTATGCTGGACTGGGTTAGGAAAATACAGCAGGAAAAGAAGGTTGTAGAGTTGGTGGATAAAGAGCTAGGGAGCAACTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTAGCTTTACTGTGTACTCAATATTTGACAGCCCACAGGCCCAAAATGTCTGATGTGGTCCGAATGCTTGAAGGGGATGGGCTTGTTGAGAAGTGGGCAATGGCATCACATGATTATGGTTGTCAAGGCATGAACCTTAGTCAGAACAACAGTTCGTCCCATCCTACTTCTGCCTCAAAACATGTTGATAGTGTTCATGATCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGATGAACGGTCTTTGGATTCTTATGCTATGGAACTTTCTGGTCCTAGATAA 1968 0.4461 MVMVMVMVMVMVMVMVMSLNCLLLLLLYFLLSREALCSAFSEPRNPEVEALMAIKEALNDPHAVLSNWDDYSVDPCSWTMITCSSDYLVTALGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGKIPPELGNLPKLQTLDLSNNRFSGLIPPSLSQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPLPKFPARSFNIVGNPLVCKSSSTEGCSGSATLMPISFSQPSSEGRERSKRLAIALGVSFSCVSLVVLFFGHLWYRKRRQHGAILYIDDCKEEGVGNLGNLKKFTFKELQRATDNFSTKNILGAGGFGNVYKGKLGDGIMVAVKRLKDVTGSAGESQFQTELEMISLAVHRNLLRLIGYCATPDEKLLVYPYMSNGSVVSRLRGKPALDWNARKRIAIGAARGLVYLHEQCDPKIIHRDVKAANVLLDDYCEAVLGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELITGMTALEFGKTVNQKGAMLDWVRKIQQEKKVVELVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSDVVRMLEGDGLVEKWAMASHDYGCQGMNLSQNNSSSHPTSASKHVDSVHDRSSMFGMTMDDDDDERSLDSYAMELSGPR* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1745 655 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Lja4g1745 655 Gene3D Phosphorylase Kinase; domain 1 284 389 - -
Lja4g1745 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Lja4g1745 655 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Lja4g1745 655 ProSiteProfiles Protein kinase domain profile. 313 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1745 655 SUPERFAMILY Protein kinase-like (PK-like) 297 583 IPR011009 -
Lja4g1745 655 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Lja4g1745 655 MobiDBLite consensus disorder prediction 619 637 - -
Lja4g1745 655 Pfam Protein tyrosine and serine/threonine kinase 315 582 IPR001245 GO:0004672|GO:0006468
Lja4g1745 655 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 655 - -
Lja4g1745 655 MobiDBLite consensus disorder prediction 603 618 - -
Lja4g1745 655 PRINTS Leucine-rich repeat signature 137 150 - -
Lja4g1745 655 PRINTS Leucine-rich repeat signature 182 195 - -
Lja4g1745 655 SUPERFAMILY L domain-like 45 217 - -
Lja4g1745 655 SMART serkin_6 313 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1745 655 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 23 655 - -
Lja4g1745 655 MobiDBLite consensus disorder prediction 603 655 - -
Lja4g1745 655 Gene3D Transferase(Phosphotransferase) domain 1 390 599 - -
Lja4g1745 655 Gene3D Ribonuclease Inhibitor 44 226 IPR032675 -
Lja4g1745 655 Pfam Leucine rich repeat 135 195 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1745 Lja-Chr4 16905031 16909211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1745 5 655 Receptor kinase-like Gene Family AT5G16000 61.912 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja4g1745 PK_Tyr_Ser-Thr 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1745 - - gmx:100797186 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1745 4 16905031 16909211 Lja4g1745 4 16905031 16909211 ECH