Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1720 ATGGGTAGAAATTTCACTCAACAAGGAGACACCTTTCTACCTCCGTCAGAACAACCGCCATTTTTTCTCCCTCAATCTCAACCTTCACCACCCACCACCACCGTTCGATCTGACAGCAGCAGCAGTTTCAGTTTCAACGACAAGGCCTTGAAGGTTAGTCCCAGCATACTCCTCATCATCATCATTCTCGCCATCGTTTTCTTCATCTCCGGTTTGCTCCACCTCCTCGTTAGATTCCTCTGGCGGCCACCGAGCAGAGAAACCGATGATTTGGACAGTGTCACCGCCCTTCAAGGCCAGTTACAGCAACTCTTCCACCTCCATGATGCTGGTGTTGACCAGTCTTTCATTGACACCCTCCCTGTTTTCCCTTTCAAAGCTATCATTGGGTTGAAGAACCCTTTTGACTGTGCTGTTTGTTTGTGTGAATTTGAACCAGAAGACAAGCTTAGATTGTTGCCGAAATGTAGCCATGCCTTTCACATGGAGTGTATTGACACATGGTTGTTGTCACATTCTACTTGTCCTCTTTGTAGAGCGAGTTTGCTACCTGAATTCTCTGCAAACAATAACCGTTCCCCCATTGTTCTTGTTCTGGAATCTGGGAGTGATAGCTCAAGGGAGATTGTCCCTGAGGGTGGTGGTGCTATTGGAAGGACTAGTTCAGTTATGACTACACATTCTCGCCTTGGTTGCTGCGGTGAGAGCGAATTCGGATCAACGCGTGTCGATTTACCTCGCAAATCGGGTGAATTAGCTGTAATTGAGAGTCCTGATTCAAATGTTGCAGTTGCAGGGGATGATGGTGTGGAGAAAGTGGTTACTGTGAAGCTGGGGAAGTACAGGAATGTGGATGGTGGTGAGGGAGGGGATGGTGAAGGAAGTAGCACTAAAAATGTAGATGCTAGAAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTTATGGATGAGAGTTCCTCATTGCAGGTACCTATTAAGAAAACCCCAATCAAGCCACAGTCAAATAAGAAGCTTGTTTTGCCTTTGACCCCAGGACACACGCTTGCAATGTCAGAATGTGATTGTGAATCCAGGAGAGACTTCAAATTCTCAGGCTTGCATGCAACTAGAGTTGATCAGAATCTTGCTGGGACTTCAAGTGCTTGTAGTGGAAATGGTGCTGCTATTGGAAAGAGCAGAAAGGAGAGTTTTTCTATATCAAAGATTTGGCTCAGGGGGAAGAAGGATAGGGCGAATTCGGCGGCGGATTCGTCGAGAAGGTCTGTTTCATTCAGGTTCCCGGCACCGCGCAATGCCGCTTCTGTCGGTGATGCAGATGATTTGAAGGCTAGGAGAAACAAATTTGACACAAGGAGTGTTATTTCTGAGATGGATTTTGGGAAATGGGAGAATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGTTTGGCTATGATGAAGAAAACCAGAGCTGCTATAGTATGGATTCTCAAGCTAGGGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTTACTGGAAGACAGAATAAGGTTGTTCACTCATCCCCTACTCCTTCCAACCTCTAG 1581 0.4674 MGRNFTQQGDTFLPPSEQPPFFLPQSQPSPPTTTVRSDSSSSFSFNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPPSRETDDLDSVTALQGQLQQLFHLHDAGVDQSFIDTLPVFPFKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSANNNRSPIVLVLESGSDSSREIVPEGGGAIGRTSSVMTTHSRLGCCGESEFGSTRVDLPRKSGELAVIESPDSNVAVAGDDGVEKVVTVKLGKYRNVDGGEGGDGEGSSTKNVDARRCFSMGSFAYVMDESSSLQVPIKKTPIKPQSNKKLVLPLTPGHTLAMSECDCESRRDFKFSGLHATRVDQNLAGTSSACSGNGAAIGKSRKESFSISKIWLRGKKDRANSAADSSRRSVSFRFPAPRNAASVGDADDLKARRNKFDTRSVISEMDFGKWENGGGGGGGGGGGGGSEFGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSSPTPSNL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1720 526 MobiDBLite consensus disorder prediction 28 43 - -
Lja4g1720 526 Pfam Ring finger domain 136 179 IPR001841 -
Lja4g1720 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 184 IPR013083 -
Lja4g1720 526 SUPERFAMILY RING/U-box 118 193 - -
Lja4g1720 526 CDD RING-H2_PA-TM-RING 136 179 - -
Lja4g1720 526 SMART ring_2 137 178 IPR001841 -
Lja4g1720 526 MobiDBLite consensus disorder prediction 1 43 - -
Lja4g1720 526 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 17 415 - -
Lja4g1720 526 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 415 - -
Lja4g1720 526 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Lja4g1720 526 MobiDBLite consensus disorder prediction 459 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1720 Lja-Chr4 16536555 16538459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1720 71 526 C3H Transcription Factor Family AT2G18650 43.220 1.97e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1720 - - lja:Lj4g3v2023880.1 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1720 4 16536555 16538459 Lja4g1720 4 16536555 16538459 ECH