Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1719 ATGCCTCCTCCTCATCAACATGGTACCACCACTGGGGATCTCGATTCCCCTCCACACCCCAAACCAAACCCACCTAACCTCCTCTCCCTCTTCCTCAAACCCATCATCATGCTCCTCCTCACCTCCCTCTTCTTCCTCTTCCTCGGTTTCGCCGCCTTCCTCCTCCTCCACCTCTTCCTCCTCGGCGGCGCTCTCCACCGCCTCCGCTTCCGCCCCGGCGCCTCCCGCTTCCCCAACACCTTCCTCCCCCGCGACATCAACAAACTCCCCCATTTTCGCGTCTCAAAGGGTTCCCCCGCCGCACCCGGACTCGATTCCCATTGCGTCGTCTGCTTAGACGGCTTCCGCAACGGCCAGTGGTGCAGGAAGCTCCCCGGTTGCTCTCATGTCTTCCACCGCCGCTGCGTCGACGCGTGGCTTGTCAAGGTCGCCGCTTGCCCCACGTGCAGGACACCTGTTCGATTAAATGCCGATTCCGCCACGGTTCAATCGCACCCTTCTAGTTCTACTCAATTTGTTACTTGCCCATCTAACCCCATTTTATAA 546 0.5934 MPPPHQHGTTTGDLDSPPHPKPNPPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLHLFLLGGALHRLRFRPGASRFPNTFLPRDINKLPHFRVSKGSPAAPGLDSHCVVCLDGFRNGQWCRKLPGCSHVFHRRCVDAWLVKVAACPTCRTPVRLNADSATVQSHPSSSTQFVTCPSNPIL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1719 181 Pfam Ring finger domain 107 150 IPR001841 -
Lja4g1719 181 PANTHER RING-H2 FINGER PROTEIN ATL56 10 171 - -
Lja4g1719 181 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g1719 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 159 IPR013083 -
Lja4g1719 181 SUPERFAMILY RING/U-box 104 156 - -
Lja4g1719 181 SMART ring_2 108 149 IPR001841 -
Lja4g1719 181 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Lja4g1719 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1719 1 159 C3H Transcription Factor Family AT2G18670 43.558 2.49e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1719 - - gmx:102670430 172.94