LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g1716	ATGCTCTCGCGATCTTGCGTGGGGTTATTGAATCTGATATCAGCGGATGATTACAATCGAGTTCCAGGGGTAATGGCGCCGGAGATTAACAATTTCGGATCAGACGGCGGCGTTTCGCCGGCGTCACGAGAACGGCGGATAATCGTGGCGAATCAGTTACCGATACGCGCTTCACGCGACGGGGAGAACGAGCACTGGCGGTTTGAATTTGACAGAGATAGTCTGGTTTTACAGGCGAAAGATGGGTTTCCATCGGAGGTTGAGGTTCTCTATGTGGGGTCGTTGAAGGCGGAGGTCGAGCCAAAGGAGCAAGACGAGGTGGCGCAGGTTCTTCTAGAGAAGTTTCACTGTGTTCCCACGTTTTTGCCTTCGGAGGTTCACAATCTCTTCTACCATGGGTTCTGTAAGCACTATCTATGGCCTCTGTTTCACTACATGCTCCCCATGTCGCCGAGCCAGGGTGCGCGGTTCGACCGCGCGCAGTGGCAGGCGTATGTTCATGCCAACAAGATCTTCGCTGATAAGGTCACGGAGGTGATTAACCCAGATGAGGATTTCGTCTGGGTTCACGATTACCACCTCATGATTCTCCCAACTTTGCTCAGGAAGCGTTTCCACCATGTGAAGCTTGGATTCTTCCTCCACAACACGTTCCCGACGTCGGAAATCTACCGGACTATACCGGTGAGAGAGGAGATTCTCAGGGCGTTTCTCAACTGTGATTTGATTGGGTTCCACACCTTTGATTACGCAAGGCATTTTTTGTCCTGTTGTAGCAGGATGCTGGGGTTGGATTATGAGTCCAAAAAGGGTCACATTGGGTTGGATTATTATGGAAGAACAGTGAATATTAAGATTCAACCAGCTGGGATTCATATGGGTTTGCTGGAATCGGTTTTGTCGTTGCCGGAAACTGCTTCCAGGGTGAAGGAGTTGAGGGAGCAGTATAAGGGGAAAATCGTGATCTTAGGAGTTGATGATATGGATTTGTTCAAGGGTATTAGCTTGAAGTTCTTGGCACTTGGGCAGCTACTGGACCAGCGTGAGCATTTGAGGGGTCGTGTGGTGCTGGTTCAGATTCTGAATCCTGCAAGAAGCAGAGGGAAGGACATTCAGGATGTGAAGAGTGAGAGTGAGGCTATTGCAAGTGAGATTAACCAGAGGTATGGCAGAAAGGGGTACCTGCCAATTGTTTGTATCAACGGCCCAGTTTCCACTCAGGAGAAGGTGGCTTACTATGCTGTGTCTGAGTGCTGTGTTGTGAGTGCTGTGAGGGATGGGATGAATTTGATGCCTTATGAGTACACTGTGTGCAGGCAGGGGAGTGTTGCCTTGGATAAGGCACTTGGGGTTGAAGGAGATGAGAATGGGAAGGTGAAACCCAAGCAGAGTGTTATTATTGTGTCTGAGTTCATTGGGTGTTCCCCTTCTCTCAGTGGAGCCATTCGGGTGAATCCGTGGAACATTGATGATCTTACTGAGGCCATGAACTCGGCCATCACAATGTCGGAGGCAGAGAAGCATTTGCGCCACGAGAAGCATTACAAGTACATAAGCTCTCATGATGTAGCCTATTGGGCGAGGAGTTTTGATCAGGATTTAGGCAGGGCTTGTAGGAAGCATCACCGTAAGAGGTGTTGGGGTTTTGGGCTGGGATTGGGATTTAGAGTTGTTGCTTTGGATCCTACCTTCAGGAAGCTCTTTGTTGATAACATTGTCTCTGACTACAGAGATACACAGAGTAGGTTGATCCTTTTGGACTATGATGGCACTATGATGCCCCAGGCCTCTATTGACAAAACTCCAAGCACTGAGGTCATTTCTGTCTTGAATAGTCTATGCAGTGATCCCAGAAATATTGTGTTTATAGTCAGCGGCAGAGATAAGGATCGCCTCAGCGAGTGGTTTTCTCCGTGTGAGAAGCTGGGTCTCTCTGCTGAGCATGGTTACTTCACCAGGTGGAGTAAGGACTCTCCTTGGCAGACCCAGGGATCAACAACAGAATTTGATTGGAAAATGGTTGTGGAGCCGGTGATGGCGCTTTATACAGAAGCAACGGATGGTTCTTTCATCGAACAAAAGGAAAGCGCAATTGTTTGGCACCATCAGGAAGCAGATCCTCATTTTGGGTCATGCCAGGCAAAAGAGCTACTTGATCACCTGGAGAATGTGCTGGCTAATGAGCCAGTGGTGGTTAAAAGGGGACAACATATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAAGGTATGGTAGTTGAAGAGCTTATCTCAACCATGAGGAGTGAGGGGAAATCACCAGATTTTCTTCTGTGCATTGGAGATGATCGCTCAGATGAAGACATGTTTGAGAGCATTGCTAGTTCAGTTTCTAACCCAGCTCTGCCAACCATATCCAAAGTGTTTGCTTGCACTGTTGGCCAGAAACCAAGCATGGCTAAATACTATTTGGAAGATACTAGCGAGGTTATCAATTTGCTCGAAGGACTCGCGACTGCATCAGCCCCAGCTACGCTGCCCATAGCTTCTCAGGAATTGCAAGGAGGAACATTGTAG	2553	0.4837	MLSRSCVGLLNLISADDYNRVPGVMAPEINNFGSDGGVSPASRERRIIVANQLPIRASRDGENEHWRFEFDRDSLVLQAKDGFPSEVEVLYVGSLKAEVEPKEQDEVAQVLLEKFHCVPTFLPSEVHNLFYHGFCKHYLWPLFHYMLPMSPSQGARFDRAQWQAYVHANKIFADKVTEVINPDEDFVWVHDYHLMILPTLLRKRFHHVKLGFFLHNTFPTSEIYRTIPVREEILRAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKKGHIGLDYYGRTVNIKIQPAGIHMGLLESVLSLPETASRVKELREQYKGKIVILGVDDMDLFKGISLKFLALGQLLDQREHLRGRVVLVQILNPARSRGKDIQDVKSESEAIASEINQRYGRKGYLPIVCINGPVSTQEKVAYYAVSECCVVSAVRDGMNLMPYEYTVCRQGSVALDKALGVEGDENGKVKPKQSVIIVSEFIGCSPSLSGAIRVNPWNIDDLTEAMNSAITMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLGRACRKHHRKRCWGFGLGLGFRVVALDPTFRKLFVDNIVSDYRDTQSRLILLDYDGTMMPQASIDKTPSTEVISVLNSLCSDPRNIVFIVSGRDKDRLSEWFSPCEKLGLSAEHGYFTRWSKDSPWQTQGSTTEFDWKMVVEPVMALYTEATDGSFIEQKESAIVWHHQEADPHFGSCQAKELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGMVVEELISTMRSEGKSPDFLLCIGDDRSDEDMFESIASSVSNPALPTISKVFACTVGQKPSMAKYYLEDTSEVINLLEGLATASAPATLPIASQELQGGTL*	851

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g1716	850	CDD	HAD_TPP	583	824	-	-
	Lja4g1716	850	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	835	-	-
	Lja4g1716	850	Pfam	Trehalose-phosphatase	585	820	IPR003337	GO:0003824\|GO:0005992
	Lja4g1716	850	Gene3D	-	665	744	-	-
	Lja4g1716	850	Gene3D	Glycogen Phosphorylase B;	300	519	-	-
	Lja4g1716	850	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	583	785	IPR006379	-
	Lja4g1716	850	SUPERFAMILY	HAD-like	582	830	IPR036412	-
	Lja4g1716	850	Pfam	Glycosyltransferase family 20	45	534	IPR001830	GO:0003824\|GO:0005992
	Lja4g1716	850	Gene3D	Glycogen Phosphorylase B;	37	299	-	-
	Lja4g1716	850	TIGRFAM	T6PP: trehalose-phosphatase	581	830	IPR003337	GO:0003824\|GO:0005992
	Lja4g1716	850	Gene3D	-	584	816	IPR023214	-
	Lja4g1716	850	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	835	IPR001830	GO:0003824\|GO:0005992
	Lja4g1716	850	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	45	539	-	-
	Lja4g1716	850	CDD	GT20_TPS	45	534	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g1716	Lja-Chr4	16491629	16494957	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g1716	10	833	Trehalose Biosynthesis Gene Families	AT2G18700	67.347	0.0	1172

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g1716	K16055		-	gmx:100810498	1434.47