Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1708 ATGGGACTAGAGGGATTGAGGTCCGGGTGGAGTGTGCCGCCGAAGCCATGCGATTCATGCAAACTGGCTTCGGCGGCACTCTTCTGCCGCCCGGACTCCGCTTTCCTCTGCATATCATGTGACTCCAAAATCCACTCCGTCAACAAACTCGCCTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTCTGCGAGCAGGCTCCAGCTTCCGTCACGTGCAAGGCAGACGCCGCAGCCCTCTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTAGCCCGCCGCCACGAGCGCGTCCCGGTGGAGCCTTTCTTTGACTCCGCTGAGTCCATCGTGAAATCCTCCTCCGCCGCAGCTGCCGCTACTGCAGCCTCCTTCGGCTTCGTCGTCCCCACCGACGAGGCCTTCGCCAGCCACGACGACGCCGACGCGGCGGCCTGGCTCATGCCGGATCCAAATTTCGGATCTAAACTCATCGACGCTCCGGATGTGAAGTCCAGGGAGATGTTCTTCTCGGAATTGGATCCGTTTCTGGATTTCGATTACACAAACTCGTTCCAGAACAATAACAACCACAACGGCGGAAACGACAGCGTTGTGCCGGTTCAGACCAAACCCCTCCCTCCTCACCCAGCTCCGATGATGAATCATCACACAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCAGCTCCTTCAATTATCCATCACAGTCTCTCAGCCAAAGCGTTTCGTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGATGGGAACGCGGTTTCAGACATGTCATATTTGAACAGCTCCGATTCGAGCGGGATGGTGGTTTCCGGCGGCGGCGGAAGCCAGCCGGCGACGCAGCTCTGCGGGATGGATCGGGAGGCGAGGGTTCTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTTGAAAAAACCATTCGATACGCTTCACGAAAGGCTTATGCGGAAACCCGGCCCAGGATCAAGGGCCGGTTCGCGAAGCGGTCTGAAATTGACTCGGAGGTGGACCGCCTCTATAGCCCGGTGATGACTGGTTCTCTTATGGTTGACTCTCCATTCGTGGTGCCAACGTTTTAG 1110 0.5748 MGLEGLRSGWSVPPKPCDSCKLASAALFCRPDSAFLCISCDSKIHSVNKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESIVKSSSAAAAATAASFGFVVPTDEAFASHDDADAAAWLMPDPNFGSKLIDAPDVKSREMFFSELDPFLDFDYTNSFQNNNNHNGGNDSVVPVQTKPLPPHPAPMMNHHTEGCFDIDFCRSKLSSSFNYPSQSLSQSVSSSSLDVGVVPDGNAVSDMSYLNSSDSSGMVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEIDSEVDRLYSPVMTGSLMVDSPFVVPTF* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1708 369 CDD Bbox1_BBX-like 16 59 - -
Lja4g1708 369 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Lja4g1708 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 369 IPR045281 GO:0009909
Lja4g1708 369 SMART bboxneu5 60 102 IPR000315 GO:0008270
Lja4g1708 369 SMART bboxneu5 12 59 IPR000315 GO:0008270
Lja4g1708 369 Pfam B-box zinc finger 14 56 IPR000315 GO:0008270
Lja4g1708 369 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
Lja4g1708 369 CDD Bbox1_BBX-like 60 102 - -
Lja4g1708 369 Pfam CCT motif 297 339 IPR010402 GO:0005515
Lja4g1708 369 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Lja4g1708 369 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Lja4g1708 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1708 Lja-Chr4 16261920 16264089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1708 1 369 C2C2-CO-like Transcription Factor Family AT5G57660 55.200 2.59e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja4g1708 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1708 - - cam:101510742 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1708 4 16261920 16264089 Lja4g1708 4 16261920 16264089 ECH