Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1706 ATGAACAAGATCATCGTTCAGGGTGAGGCTTCGCTGAAGAATCGATTCGGCGGAGGCGATGGCTGCGTTCGATCATCCTTTGCATGCGTTCCGCGGGTTCCAAATCGGGGATGTGAACTTGTAGCCAAGCGAGCTCGCAGATCAAGTTCTCCTCAGTCCTCTGAAGATGAGGCTTCTGCTAAGCGCCATAAGAAATTCAAGCGAGCTCGTTCTTCAAAATTCTTTGATGAAGATCAATTGAGTGTGAACAAGCGTGTGATAGAGGTTGCTGCCAATAAAACGCGTTCATCCTCACAAATCAGAACACTTATACTTGCAAACCTATCGTTTGAAGTACAAGAATCACATGTGAAAAAATTCTTCCACAAATGTGGAAGGATTGATTATGTCTACTTGGTTAGAGATAGAGAACAGAACTGTTTAGGGTATGGTTACATTAGGTTCTCCACGGCGGATGAAGCTGCAAAAGCTGTCTTATATAATAACTCAACACTTCTTCAACGACCCATAAGGATTGAGTACTCGAAGCATAGAGACTACCGTTTGTCCAACAGCAGGAATACAACTGCGTTTGTTATAGGTTTTGACAGATCACTCAGTGAGGAACAGGTTGAAGAAAGTCTGGATAAACACTTCTATCGTTCTGATATCACAAGAACTACAGTTGTGAAAAACAAGGGGTGA 684 0.4298 MNKIIVQGEASLKNRFGGGDGCVRSSFACVPRVPNRGCELVAKRARRSSSPQSSEDEASAKRHKKFKRARSSKFFDEDQLSVNKRVIEVAANKTRSSSQIRTLILANLSFEVQESHVKKFFHKCGRIDYVYLVRDREQNCLGYGYIRFSTADEAAKAVLYNNSTLLQRPIRIEYSKHRDYRLSNSRNTTAFVIGFDRSLSEEQVEESLDKHFYRSDITRTTVVKNKG* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1706 227 SMART rrm1_1 102 173 IPR000504 GO:0003723
Lja4g1706 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 177 IPR000504 GO:0003723
Lja4g1706 227 PANTHER FI01540P 51 216 - -
Lja4g1706 227 CDD RRM_SF 103 173 - -
Lja4g1706 227 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 51 216 - -
Lja4g1706 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 171 IPR000504 GO:0003723
Lja4g1706 227 Gene3D - 39 184 IPR012677 -
Lja4g1706 227 SUPERFAMILY RNA-binding domain, RBD 100 211 IPR035979 GO:0003676
Lja4g1706 227 MobiDBLite consensus disorder prediction 43 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1706 102 208 Eukaryotic Initiation Factors Gene Family AT4G34110 30.275 5.13e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1706 K13126 - lja:Lj3g3v3513520.1 94.7449