Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1704 ATGGCACGTCAATTAGGAGCTTCATCCTTTGGTGCTAACAGTAATGGTCTCGACGGAGAAATACCCACAACAAATGAAAAGAGCTTCCCATGTAAATTTTGCAAGCAAAAGTTCTCTACCTCACAAGCTTTGGGAGGACACCAAAACGCACATAAAAAAGAGCGTTCTCTAGAAAAATTTCGTCAACAACTTGATGCTAGTTGTTTTGGGCTTTCACACTTTCCTTCTTATTCTTCTTATCCAACTCTCCATGAAGGTTTATACAGGTCATTTAGGGATGACTCCTTAAATCTCAGACCTTCTAATCCTTTGATGACCTCAACTGGATTTCGGTACGATCAACGCTCACCATATTTTAATGCGATCAGAAATATAAGAAGTCATCATGCAATTCCAAGTACTGCAAGGTCAGAGAATTATCGTAATGAAACACTTGCACTTTTCCCAAATGTCACCACCAATGTAGCAAGCCAAGTTGTGAACACGGAAAGCACTCCAAGGTCAAGGAATGGTGTTGAAACTCTTGCACTTTTCTCAAATGTTCCCACCAATGTAGCAAGTCAAGCTCCAATACCAATGAGAAGGAATCCTTCAGTGCCGGAAGAAAATTTTGAAGTGCCAGCTGATATTGATTTGTCACTTAGGCTTGGTTTTAGATCATGA 663 0.4027 MARQLGASSFGANSNGLDGEIPTTNEKSFPCKFCKQKFSTSQALGGHQNAHKKERSLEKFRQQLDASCFGLSHFPSYSSYPTLHEGLYRSFRDDSLNLRPSNPLMTSTGFRYDQRSPYFNAIRNIRSHHAIPSTARSENYRNETLALFPNVTTNVASQVVNTESTPRSRNGVETLALFSNVPTNVASQAPIPMRRNPSVPEENFEVPADIDLSLRLGFRS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1704 220 PANTHER ZINC FINGER PROTEIN JAGGED 23 216 IPR045320 GO:0003700
Lja4g1704 220 MobiDBLite consensus disorder prediction 7 21 - -
Lja4g1704 220 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g1704 220 SUPERFAMILY beta-beta-alpha zinc fingers 24 57 IPR036236 -
Lja4g1704 220 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Lja4g1704 220 Gene3D Classic Zinc Finger 13 69 - -
Lja4g1704 220 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 23 216 - -
Lja4g1704 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1704 Lja-Chr4 16127054 16127716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1704 3 88 C2H2 Transcription Factor Family AT5G27880 43.333 1.04e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g1704 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1704 - - gmx:102659582 108.612