Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1695 ATGGGTAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTGCACTCAAATCCTACATAGAAAAGAATGGAACTGGAAACAATTGGATTGCTCTTCCTCAGAAAATAGGGCTCAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTAAATTACTTGAGGCCAAACATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTGTACATTAGCATTGGCAGCAGGTGGTCCATTATTGCTGCTCAGCTACCTGGAAGGACTGACAATGACATCAAGAACTACTGGAACACCAGATTGAAGAAGAAATTGCTTGGGAGGAGAAAACAATCTAACCACAGCACAAAAGACACAAATGGATCAATAGAGGAGAATTCTTATTCAAACAATGCACTGAGCAGTTCTGCACTTGAAAGACTCCAACTTCATATGCAACTTCAGAGTTTTCAGAACCCTTTCTCTTTCTACAACAACACCAATAACCCTACACTCTGGCCCAACAAGTTGCATCCTTTTCAAGAAAAAATGATCCACCAGAGCCTGCAGCAACAGCAGCCCTTGAATAATCATGATGGCTCTAACAGCAACCCTGTGATCATGCAACAAAAAGATGAGTTCTACAAGCCTTCTTTTGGTGATGGTGTTGTGCTTCAACAAGATGGTGCTAAGATCAATATTAACACCACACCACAGGTTGGTGGTGTTTTGGAGAGTCCTTTGAGTAACAGTTCTGTTCCCTTCTCTGCTTCTGGGAGTGTTGCACCAAGAGGAGAAGGTTCTGAGAAGAATTATAATATGGGGTTTCAGTTTCAGTTTCAGCAAGTTGGTGCACTGCAAACTGAACTCGATGACATTCTCAACAACAGAACAGTGGGTAGTTACATGCCACAGCAGGAGGAAGATCATCATGTGGTGGCTGATCAATTTGATTGTTTCAGAGAGATGAATGGTGGATCAAAGGACAGTTTGATTTGGTGGTCCAATGATTCTGACACCAAATCAGGATCCTCAAACTCTTGGGACTCTTCAACTAATCAAGTTCTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTTGGTTACAGTCTTTGA 1131 0.4262 MGRAPCCDKANVKKGPWSPEEDAALKSYIEKNGTGNNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNHSTKDTNGSIEENSYSNNALSSSALERLQLHMQLQSFQNPFSFYNNTNNPTLWPNKLHPFQEKMIHQSLQQQQPLNNHDGSNSNPVIMQQKDEFYKPSFGDGVVLQQDGAKININTTPQVGGVLESPLSNSSVPFSASGSVAPRGEGSEKNYNMGFQFQFQQVGALQTELDDILNNRTVGSYMPQQEEDHHVVADQFDCFREMNGGSKDSLIWWSNDSDTKSGSSNSWDSSTNQVLLPEGMFQDYELGYSL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1695 376 CDD SANT 71 113 IPR001005 -
Lja4g1695 376 MobiDBLite consensus disorder prediction 119 139 - -
Lja4g1695 376 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja4g1695 376 Gene3D - 70 142 - -
Lja4g1695 376 PANTHER OS09G0431300 PROTEIN 1 331 - -
Lja4g1695 376 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja4g1695 376 CDD SANT 16 62 IPR001005 -
Lja4g1695 376 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja4g1695 376 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja4g1695 376 SMART sant 13 64 IPR001005 -
Lja4g1695 376 SMART sant 67 115 IPR001005 -
Lja4g1695 376 Gene3D - 7 68 - -
Lja4g1695 376 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja4g1695 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja4g1695 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja4g1695 376 PANTHER OS09G0431300 PROTEIN 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1695 Lja-Chr4 16047156 16048943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1695 1 185 MYB Transcription Factor Family AT5G57620 76.963 1.21e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g1695 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1695 K09422 - gmx:778083 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1695 4 16047156 16048943 Lja4g1695 4 16047156 16048943 ECH