Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1685 ATGAATTTCCATCCTAATAGTTCTTCTCTTCACCCAAGCCAACAAGCTGAGATTGAGAGTGAGAGTCATCACCTCAATCTTGATCTTGTCCTTGAGCCTTCTTCATCTTCTTGTTCTTCATCTTCACCTATTAATCACAACCCCATAGAGCCTAGGATGTTCTCATGCAACTATTGCCAGAGGAAGTTTTACAGCTCTCAAGCACTTGGTGGACACCAGAATGCTCACAAGCTGGAGAGGACACTGGCTAAGAAGAGTAGAGAATTGAGTTCAGCCATGCAATCTTATGTGGGACCAGAACAGCATCATCAGTCATCAAACTTCAGTAGTGGTAATTCTCATCATCATCATCATCAACATCTTGGTCATCATGCTCTTGGGGTTCCAGATCATAACCAAGGACATCATGGTGTGGGGCTTGCTGGACAAAAAAACTTCAGCTATGGTTCAAGGGGTTACACTACTTCTGAACATGTTCAGGAGGATATTAGCCAACTTGACTTGTCTTTAAGGCTCTGA 519 0.4316 MNFHPNSSSLHPSQQAEIESESHHLNLDLVLEPSSSSCSSSSPINHNPIEPRMFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSYVGPEQHHQSSNFSSGNSHHHHHQHLGHHALGVPDHNQGHHGVGLAGQKNFSYGSRGYTTSEHVQEDISQLDLSLRL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1685 172 Coils Coil 75 95 - -
Lja4g1685 172 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lja4g1685 172 Gene3D Classic Zinc Finger 34 111 - -
Lja4g1685 172 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g1685 172 MobiDBLite consensus disorder prediction 87 112 - -
Lja4g1685 172 PANTHER ZINC FINGER PROTEIN 2 23 172 - -
Lja4g1685 172 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g1685 172 MobiDBLite consensus disorder prediction 87 172 - -
Lja4g1685 172 MobiDBLite consensus disorder prediction 147 163 - -
Lja4g1685 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Lja4g1685 172 PANTHER ZINC FINGER PROTEIN JAGGED 23 172 IPR045320 GO:0003700
Lja4g1685 172 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1685 Lja-Chr4 15910975 15912239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1685 1 89 C2H2 Transcription Factor Family AT5G57520 64.835 8.73e-26 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1685 - - vra:106768043 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1685 4 15910975 15912239 Lja4g1685 4 15910975 15912239 ECH