Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g1685 | ATGAATTTCCATCCTAATAGTTCTTCTCTTCACCCAAGCCAACAAGCTGAGATTGAGAGTGAGAGTCATCACCTCAATCTTGATCTTGTCCTTGAGCCTTCTTCATCTTCTTGTTCTTCATCTTCACCTATTAATCACAACCCCATAGAGCCTAGGATGTTCTCATGCAACTATTGCCAGAGGAAGTTTTACAGCTCTCAAGCACTTGGTGGACACCAGAATGCTCACAAGCTGGAGAGGACACTGGCTAAGAAGAGTAGAGAATTGAGTTCAGCCATGCAATCTTATGTGGGACCAGAACAGCATCATCAGTCATCAAACTTCAGTAGTGGTAATTCTCATCATCATCATCATCAACATCTTGGTCATCATGCTCTTGGGGTTCCAGATCATAACCAAGGACATCATGGTGTGGGGCTTGCTGGACAAAAAAACTTCAGCTATGGTTCAAGGGGTTACACTACTTCTGAACATGTTCAGGAGGATATTAGCCAACTTGACTTGTCTTTAAGGCTCTGA | 519 | 0.4316 | MNFHPNSSSLHPSQQAEIESESHHLNLDLVLEPSSSSCSSSSPINHNPIEPRMFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSAMQSYVGPEQHHQSSNFSSGNSHHHHHQHLGHHALGVPDHNQGHHGVGLAGQKNFSYGSRGYTTSEHVQEDISQLDLSLRL* | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g1685 | 172 | Coils | Coil | 75 | 95 | - | - | |
Lja4g1685 | 172 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 56 | 76 | IPR013087 | - | |
Lja4g1685 | 172 | Gene3D | Classic Zinc Finger | 34 | 111 | - | - | |
Lja4g1685 | 172 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lja4g1685 | 172 | MobiDBLite | consensus disorder prediction | 87 | 112 | - | - | |
Lja4g1685 | 172 | PANTHER | ZINC FINGER PROTEIN 2 | 23 | 172 | - | - | |
Lja4g1685 | 172 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Lja4g1685 | 172 | MobiDBLite | consensus disorder prediction | 87 | 172 | - | - | |
Lja4g1685 | 172 | MobiDBLite | consensus disorder prediction | 147 | 163 | - | - | |
Lja4g1685 | 172 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 54 | 81 | IPR013087 | - | |
Lja4g1685 | 172 | PANTHER | ZINC FINGER PROTEIN JAGGED | 23 | 172 | IPR045320 | GO:0003700 | |
Lja4g1685 | 172 | SUPERFAMILY | beta-beta-alpha zinc fingers | 51 | 81 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g1685 | Lja-Chr4 | 15910975 | 15912239 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g1685 | 1 | 89 | C2H2 Transcription Factor Family | AT5G57520 | 64.835 | 8.73e-26 | 94.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g1685 | - | - | vra:106768043 | 177.178 |