Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1684 ATGTCTCCTCCACCACCACCACCACAAGATGAAGAACAATTCATCTTCCGCTCCAAACTCCCCGACATTCCCATCCCCACACACCTTCCTCTCCACTCTTACATCTTTGAGAACCTCCCCCGCTTCCAACACCGCCCATGCCTCATCGACGGCGACACCGGAAAAATCCACACCTATGCCGACGTCCACCTCGCCTCCCGGAAGATCGCCGCCGGCCTCCACTCCCTCGGCATCCGCCACGGTGATGTGATCATGCTCGTCCTCCGTAACTGCCCCCAGTTTGCCCTTGCCTTCCTCGGCGCCTCGTTTGCCGGAGCCGCCGTCACCACCGCCAACCCCTTCTACACGCAATCGGAGCTAGCAAAACAAGCAACGGCCACAAAAACAAAACTCATCATCACACAATCCGCGTATCTTGAAAAAATCAATGGCTTCACGGAGAGCAATGATATCACCGTGATAAGCATTGATTCCACAGAAAACAGAGGTGCTCTGCATTTCTCTGTTTTGACAGACGCCGACGAAAACAGAGCACCGGAAGTTGAATTCAGCCCAAACGACATCGTTGCGCTACCGTTTTCTTCCGGCACGTCGGGGCTTCCCAAAGGGGTGGTGTTAACCCATCAGAATCTTGTCACCACGGTGGCGCAGCTCGTCGACGGTGAAAATCCTCACCAGTATACTGACGAAGAGGACGTGCAACTCTGCGTGCTCCCAATGTTTCATATCTACGCGCTGAACTCCATTTTGCTGAGTAGTATGCGCGCCGGTGCGGCGGTGCTGATTCTGCAGAAGTTTGAGATTGTGACGCTGTTGGAGGTTATACAGAAGTACAGGGTGACGGTGGCGTCGTTTGTGCCGCCGATTGTTTTGGCGTTGGTTAAGAGCGGGGAAGCTCACCAGTACGACTTGTCGTCGATTCGGGTCATGATCACCGGTGCGGCGCCTATGGGGATGGAGCTTGAAGAGGCTGTGAAGGCAAGGCTTCCACAAGCCAAACTAGGACAGGGATATGGAATGACAGAGGCAGGGCCACTGGCCATTAGCTTAGCATTTGCAAAGGAGCCTTTCAAGACAAAATCAGGTGCATGCGGGACCGTCGTAAGAAATGCCGAGATGAAAATCGTGGATACAGAGACCGGTGCTTCCCTTCCAAGAAACAACCCCGGTGAAATTTGCATCAGAGGCACAAAGGTTATGAAAGGGTACTTGAATGACCTAGAGGCGACGAAAAGAACTGTAGACAAAGAAGGGTGGTTACATACCGGTGATATAGGTTTCATCGACGATGATGATGAGCTTTTCATCGTCGATCGATTAAAGGAGTTAATCAAATACAAAGGATTCCAAGTAGCTCCTGCCGAGCTCGAAGCATTGTTGATTGCTCACCCAAACATTTCTGATGCTGCTGTTGTACCCTTGAAAGATGAAGCTGCAGGAGAATTACCAGTTGCATTTATCGTGAGATCAAATGGTTCTAAGATCACCGACGATGAAATCAAACAGTACATTTCAAAACAGGTGGTATTTTACAAGAGAATCAACAGAGTTTTCTTCACGGACGCCATTCCTAAAGCAGCCTCAGGCAAAATTCTGCGAAAGGAACTAACTGCAAGACTAAACAAAGATTTGGTGGCCACATAG 1644 0.5049 MSPPPPPPQDEEQFIFRSKLPDIPIPTHLPLHSYIFENLPRFQHRPCLIDGDTGKIHTYADVHLASRKIAAGLHSLGIRHGDVIMLVLRNCPQFALAFLGASFAGAAVTTANPFYTQSELAKQATATKTKLIITQSAYLEKINGFTESNDITVISIDSTENRGALHFSVLTDADENRAPEVEFSPNDIVALPFSSGTSGLPKGVVLTHQNLVTTVAQLVDGENPHQYTDEEDVQLCVLPMFHIYALNSILLSSMRAGAAVLILQKFEIVTLLEVIQKYRVTVASFVPPIVLALVKSGEAHQYDLSSIRVMITGAAPMGMELEEAVKARLPQAKLGQGYGMTEAGPLAISLAFAKEPFKTKSGACGTVVRNAEMKIVDTETGASLPRNNPGEICIRGTKVMKGYLNDLEATKRTVDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISDAAVVPLKDEAAGELPVAFIVRSNGSKITDDEIKQYISKQVVFYKRINRVFFTDAIPKAASGKILRKELTARLNKDLVAT* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1684 547 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 11 540 - -
Lja4g1684 547 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Lja4g1684 547 Pfam AMP-binding enzyme 40 446 IPR000873 -
Lja4g1684 547 SUPERFAMILY Acetyl-CoA synthetase-like 8 542 - -
Lja4g1684 547 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Lja4g1684 547 CDD 4CL 25 536 - -
Lja4g1684 547 Gene3D - 8 440 IPR042099 -
Lja4g1684 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 540 - -
Lja4g1684 547 Gene3D - 441 546 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1684 Lja-Chr4 15898501 15906434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1684 9 508 Monolignol Biosynthesis Gene Families AT1G51680 63.976 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1684 K01904 - gmx:548034 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1684 4 15898501 15906434 Lja4g1684 4 15898501 15906434 ECH