Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1661 ATGCATGCCAGCCAGTTCGACGGCAATGCAGCCTTCTCCGGCGGCGGATTCATGCCTTCTCAGGCCACTCAGGGCCATGACCAGCCCTTCTTCCCCTCCAAGAATCGTGATGCTCAGTCCTTGCTTCCTCTCACGATCAAGCAGATAAAATACGCTGTTCAATCAAATGATGATAAAACCAATTTGATTATCGACGGTGTCGACGTTAACAATGTTACTCTTGTAGGAAGGGTGTGCAACAAAGCTGGAAGGGTTACTGATGTTACTTTTGTACTTGATGATGGTACTGGAAGGATTGATTGTAACAAATGGCTTCAGGAAGCTGCAGAATCTAATGAAGTGGAGAGTATTATCATGGATGGGGTGTATCTGCGGCTACATGGACAGTTGAAGGGTTTTCAGGGTAAAAGGACTTTAAATGTTTTCTCTTTCAGGCCTGTGACTGACTTCAACGAGATTGCCAGCCATTTCATTGATTGCATATATGTTCATCTCTATAATTCCAGATTACGGGCTAGTGTCCCTGTTCAGCAACATGTTTCTAATTCCACACAAATTACTCCCACAAAAGGTTATCAAGCTCAAGCTGTCCCACCAAATCAATTCTCTGGTCAACAAAACAATGGTCAGAATAGGAATAGCCTTGAAAATATGGTTTTAGACGTTTTACTTCTTCCCACAAGCAGGGCAAAGGAGGAGGGAGTCTCTCAAGATCTTATTGCACAGCATCTTGGAATTCCATTGGATAAGCTCATGCCGGCTATTAAGAGTCTTGGTGATGACGGTGCCATTTACGAAACTATAGCTGAGCACTACAAGTCAATCGTCGATTGTTGA 837 0.4373 MHASQFDGNAAFSGGGFMPSQATQGHDQPFFPSKNRDAQSLLPLTIKQIKYAVQSNDDKTNLIIDGVDVNNVTLVGRVCNKAGRVTDVTFVLDDGTGRIDCNKWLQEAAESNEVESIIMDGVYLRLHGQLKGFQGKRTLNVFSFRPVTDFNEIASHFIDCIYVHLYNSRLRASVPVQQHVSNSTQITPTKGYQAQAVPPNQFSGQQNNGQNRNSLENMVLDVLLLPTSRAKEEGVSQDLIAQHLGIPLDKLMPAIKSLGDDGAIYETIAEHYKSIVDC* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1661 278 Pfam Replication protein A C terminal 164 270 IPR014892 -
Lja4g1661 278 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 2 274 - -
Lja4g1661 278 SUPERFAMILY "Winged helix" DNA-binding domain 213 274 IPR036390 -
Lja4g1661 278 PIRSF RPA32 1 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g1661 278 SUPERFAMILY Nucleic acid-binding proteins 41 168 IPR012340 -
Lja4g1661 278 Gene3D - 206 276 IPR036388 -
Lja4g1661 278 Gene3D - 33 169 IPR012340 -
Lja4g1661 278 PANTHER REPLICATION PROTEIN A-RELATED 2 274 IPR040260 -
Lja4g1661 278 CDD RPA2_DBD_D 71 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1661 Lja-Chr4 15633503 15637297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1661 3 275 Core DNA Replication Machinery Family AT2G24490 45.652 1.25e-77 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1661 K10739 - gmx:100782819 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1661 4 15633503 15637297 Lja4g1661 4 15633503 15637297 ECH