Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1660 ATGGATCACTCTTCCACTTCTTCACCATCTCCCAACACAAACAACAACACCCTTGCTTTCTCTCTTTCCAATCACTTTCCCAACCCTTCCCCTTCTTCCACCTCTCATCTCTCCCTTTTCCACTCCTTCAACTTCCCCACTTCCACACCATCTCTCTCCCTCTCAGGAACCAACACGTTGGATGCTACACCGGACAGAGGAGCCACCAACCTGTCCATTTTCACCGGTGAACCGAAGCTCGAGGACTTCCTAGGCGGCTCCGTCGCAGCAACCACCACGTGTGGACCCCAACACCTGCACCAATTCTCCACCGACATATACGAGTCGGAGTTAAAGACAACAATAGCCGCTTGCTTCCCTCGCGGTTTCAACTCCGAACCTAACACCGAACCTCAAAAGCCTTCACCCAAGAAAGCCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACCAGACATAGATGGACTGGGAGATATGAAGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGACAAAGTAGGAAAGGAAGACAAGTTTATCTGGGTGGCTATGACAAGGAAGAAAAGGCAGCTAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGCCCAACCACCACCACCAACTTCCCAATTTGCAACTATGAAAAGGAACTGGAGGAGATGAAGAACATGACCAGACAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATTTACAGAGGAGTGACAAGGCATCACCAGCATGGCCGATGGCAGGCAAGGATAGGTAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACACAAGAAGAAGCTGCAGAAGCATATGACATTGCAGCAATCAAATTCAGAGGACTAAATGCCGTAACAAACTTCGACATGAGCCGCTACGACGTGAAGAGCATCGCAAACAGCAACCTCCCCATCGGTGGTTTATCCTCCAAGAACAACAAAAACTCCACAGCAGATTCACATTCTGATCAGAGCAAAAGCGATGAACGAGATCCATCTTCAGCTTCTTCATCAGGAAACTTCACACCTTCAAGCTCCAACACACTCAGCTTCGCCATTCCCATCAAGCAAGACACCAACACCACCACTTCAGATTACTATAGTACCCTCCTCGGGTTCCACAACAACAACACAGTACCCTTTCACATGGACTACTCAAGTGGTGCACCTTCATCAAATAACAACAATGATAACAGTGCTGCACAGTTTTTGAGTAGTGGCATTTTGATGCAACAACAACAACATGGAGGAAGTAGCAGTACTGTTTCATCTTCAAGTAGTTCAGTTGTCACGTTGGCCACGCCAGTTTTTTCCTTAAACAGTTATGAGAACGGTTATGGAAACTGGATGGGACCCACCCTGCACAATAGTACATTCCAAAGCCATGCAAAACCAAGTCTGTTTCAAACACCAATATTTGGCATGGAGTGA 1491 0.4789 MDHSSTSSPSPNTNNNTLAFSLSNHFPNPSPSSTSHLSLFHSFNFPTSTPSLSLSGTNTLDATPDRGATNLSIFTGEPKLEDFLGGSVAATTTCGPQHLHQFSTDIYESELKTTIAACFPRGFNSEPNTEPQKPSPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPICNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGLSSKNNKNSTADSHSDQSKSDERDPSSASSSGNFTPSSSNTLSFAIPIKQDTNTTTSDYYSTLLGFHNNNTVPFHMDYSSGAPSSNNNNDNSAAQFLSSGILMQQQQHGGSSSTVSSSSSSVVTLATPVFSLNSYENGYGNWMGPTLHNSTFQSHAKPSLFQTPIFGME* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1660 496 MobiDBLite consensus disorder prediction 351 365 - -
Lja4g1660 496 ProSiteProfiles AP2/ERF domain profile. 149 215 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 SUPERFAMILY DNA-binding domain 148 216 IPR016177 GO:0003677
Lja4g1660 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 454 - -
Lja4g1660 496 SUPERFAMILY DNA-binding domain 250 311 IPR016177 GO:0003677
Lja4g1660 496 Pfam AP2 domain 149 207 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 Pfam AP2 domain 251 301 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 MobiDBLite consensus disorder prediction 324 365 - -
Lja4g1660 496 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 PRINTS Ethylene responsive element binding protein signature 291 311 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 SMART rav1_2 149 221 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 SMART rav1_2 251 315 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 ProSiteProfiles AP2/ERF domain profile. 251 309 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 128 454 - -
Lja4g1660 496 CDD AP2 250 311 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 CDD AP2 148 216 IPR001471 GO:0003700|GO:0006355
Lja4g1660 496 Gene3D AP2/ERF domain 149 217 IPR036955 GO:0003700|GO:0006355
Lja4g1660 496 Gene3D AP2/ERF domain 251 311 IPR036955 GO:0003700|GO:0006355
Lja4g1660 496 MobiDBLite consensus disorder prediction 324 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1660 Lja-Chr4 15610813 15614290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1660 84 496 AP2-EREBP Transcription Factor Family AT5G57390 55.134 2.73e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja4g1660 AP2 3.7e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1660 4 15610813 15614290 Lja4g1660 4 15610813 15614290 ECH