Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1658 ATGGCTGCAGATTCGTCTCTTGAAGGTGTTGCTCTTGATCCTTCTAAATGCAGTAACCTGAGTATGGAGGAAAAAAGAGAGCTTGTGTATGAAATATCTAAGTGGTCTCATGGCGCATCCGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATCTTGTGTGCTGAGATGGGGAAAGAAAGGAAGTATACTGGCCTGACAAAGTTGAAAATTATAGAAAACCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGCCTGAAATTGCTACTGACCCTGAAACACATTCTTCTCCTGCACAAGGACAGAAACCTACTAAAAGACAGAGGAAAACTGAGACCCCGTCTCGATTACCTGTTCCTGCAAACAATCTTTCAGTTAATAATGGTGGTGACATGGGGAATACCGCATACTGCAAAAACTCAGCATGCAAGGCTACTCTACATCAAGCAGATGTATTCTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGCTCTGAAACTCCATTTCCTGGTGTTTCGTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCCGGAATTGGTAATGATTGTGAGCGTCCCAAGCTCGATGGTGGCTTCTACTGTGTCTCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGCGAAAACAACTGATGGTAGCAAAGGATACCAGACGCGTGGACATACTATGCTATCGTGTCTCCTTAAGTCAAAGACTTTTACAAGGGACTGAAATGTATCAAGAACTTTATAAAATTGTTGATAAAGCAGTGAAGAAGCTTGAACCTGAAGTGGGTCCACTGACTGGCTCACCGGTAAAGATTGGTAGAGGGATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAACTCTGTAATTTTGCTCTAGAATCACTCGATTCTCTGCTTTCTAAAAGGACCTTACCTTTGTCCCCCAGCCCAACTATTCAAGATGCACATTTACTGGCTCCAAATATGTTGAGGTTTGAAGATGTCACTACAACATCCCTCACTGTTATTTTGGGTTTTGAAGATCCTTCTGGTGAAAATATTGCTGGTTACACCTTGTGGCATCGCAAAGCTGATGATGTGGACTATCCAGTGGATCCAACTTGCGCACTGCTCCTACCAAATAGAAGATTGAGTATCAGGGGTCTACTTCCAGGTACGGAATACAGTTTCAAAGTTGTTTCCAATGACTCGGCGGAGTCGGGTATGTGTGAAGTTCAGGTCTCAACAGAGCATGGTGAGGATGAAGTCCCTAATTGCTCAGCCACAGAAAGAAGTCAGAGCCCTGTAACCAACTGCAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACCAATAACAGTAACCCATATAGTGACCAGACCGATAATCGAGCCGATAATTATCATTCTTATCACAAGGATAGTGAACAGAATGCTTCTGAAAATTTATCCAATGGTGTTATCAACTGTTCCAATAAGGTTGCAGTGGGGATTCCCACTGATTCGGATTCCTTGTCAGACAAGCAGCATGATGTAGTAATGACTGGTTCCCAACCTAGTTCTGATGTTCTAAAGCTTGAGAAGAAGCAGTCACCAGACGAACAAGTCACTGAGGACATGAGCACTGAGGACGGGTTGAATTCCACGGTTCTAACCGGAAGGGAATGCGTGCCACTAGTAGGTAGATCAGAAGGAGGCCTGCCTAATACTCCATGCAAACTGGAATTACCTAAGGATGGGCCAGGAAGAAATGGGAGATCTAAATCCAGTGGCAAAGATAAAGAAAATGGATCTGGGAAAAGGGAGGGCCCCCAAAATGGAAGCACATCCAAGAAGAGAATTGCGGAAAGGCCAGATGAGGGCTGCGCCGCCGCCAATGGTTCTTCGGATCAGGATTTTGAGTATTATGTAAAGGTGATTAGATGGTTAGAGTGTGAAGGACATATAGAAAAGAACTTCAGGCAGAAATTTCTGACATGGTACAGCTTAAGGGCAACCCTTCAAGAAATGAGAGTTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCGTCTCTTGCAGAGCAACTTGTTGACACCTTCTCAGAATGTATATCAAGCAAGAGAACATCAACGGTGCCGGCAGGATTCTGCATGAAGCTTTGGCATTGA 2217 0.4371 MAADSSLEGVALDPSKCSNLSMEEKRELVYEISKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGPEIATDPETHSSPAQGQKPTKRQRKTETPSRLPVPANNLSVNNGGDMGNTAYCKNSACKATLHQADVFCKRCSCCICHQYDDNKDPSLWLICSSETPFPGVSCGLSCHLECALKHDGSGIGNDCERPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEMYQELYKIVDKAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCNFALESLDSLLSKRTLPLSPSPTIQDAHLLAPNMLRFEDVTTTSLTVILGFEDPSGENIAGYTLWHRKADDVDYPVDPTCALLLPNRRLSIRGLLPGTEYSFKVVSNDSAESGMCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNSNPYSDQTDNRADNYHSYHKDSEQNASENLSNGVINCSNKVAVGIPTDSDSLSDKQHDVVMTGSQPSSDVLKLEKKQSPDEQVTEDMSTEDGLNSTVLTGRECVPLVGRSEGGLPNTPCKLELPKDGPGRNGRSKSSGKDKENGSGKREGPQNGSTSKKRIAERPDEGCAAANGSSDQDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATLQEMRVVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSTVPAGFCMKLWH* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1658 738 MobiDBLite consensus disorder prediction 580 646 - -
Lja4g1658 738 MobiDBLite consensus disorder prediction 86 128 - -
Lja4g1658 738 Pfam Fibronectin type III domain 346 421 IPR003961 GO:0005515
Lja4g1658 738 Gene3D Immunoglobulins 343 442 IPR013783 -
Lja4g1658 738 SUPERFAMILY Fibronectin type III 346 428 IPR036116 GO:0005515
Lja4g1658 738 MobiDBLite consensus disorder prediction 520 567 - -
Lja4g1658 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 738 IPR044514 GO:0010048|GO:0040029
Lja4g1658 738 MobiDBLite consensus disorder prediction 600 621 - -
Lja4g1658 738 MobiDBLite consensus disorder prediction 440 485 - -
Lja4g1658 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 738 - -
Lja4g1658 738 MobiDBLite consensus disorder prediction 430 504 - -
Lja4g1658 738 SMART FN3_2 344 428 IPR003961 GO:0005515
Lja4g1658 738 MobiDBLite consensus disorder prediction 520 546 - -
Lja4g1658 738 CDD PHD_VIN3_plant 161 226 - -
Lja4g1658 738 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Lja4g1658 738 CDD FN3 346 428 IPR003961 GO:0005515
Lja4g1658 738 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1658 Lja-Chr4 15591526 15596807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1658 4 486 PHD Gene Family AT4G30200 54.319 7.93e-165 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1658 - - gmx:100794721 1289.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1658 4 15591526 15596807 Lja4g1658 4 15591526 15596807 ECH