Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1656 ATGAAGTATATGCGATCAGACAGCTTGAAGAGGATCTTTTTCTTTAGAAGAAGTGGTTCCAGGGAGCATGTTCTGCTCCCCATCGGTTTCAATAGTGAAGAAAACGATGTGAAGTTGGAGATTCTTCCACTTCCACTTGAAGAACCTTCTCATAAACCCACTTGGAAGTGTTTTTCTTATGAAGAGTTGTTTGATGCTACCAATGGTTTCAGCTCAGAAAATATTGTAGGAAAAGGAGGATATGCAGAGGTTTACAAGGCAACACTGAAAAATGGTGAGGAAATTGCAGTGAAGAGGCTCACAAGAACTTGCAGGGATGAGAGGAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTTCACCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGTCTTTACCTGGTTTTTGAGCTTTCTTCAAGAGGCACTGTTTCATCTCTTCTTCATGATGAAAAATTGGCTCCTCTAGATTGGAAAACAAGGCATAAAATAGCTCTTGGGACTGCACGTGGCCTTCACTATTTGCACAAAGGTTGCAAGAGGAGGATAATCCACAGGGACATCAAGGCTTCAAACATTCTATTGACAAAAGATTTTGAGCCAAAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACCCATCATTCAATTGCCCCTATAGAAGGGACATTTGGACATTTGGCCCCTGAGTACTACTTGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTGTTCTTGCTAGAAGTTATCTCTGGTAGGAAACCGGTGGATGGGTCTTACCAAAGCTTACATACCTGGGCTAAACCAATTTTGAACAAGGGCGAAATAGAACAACTAGTAGATCCAAGGCTTGAGAAGGCTTATGATGTGACACAGTTGAATAGAATTGCCTTTGCTGCCTCTCTGTGCATTCGAGCATCTTCAACTTGGCGACCTACCATGAGCGAGGTATTGGAGATTATGGAAGAGGGAGAGATGGATAAAGAGAAGTGGAAAATGCCAGAAGAAGAAGAAGAGCAAGAGGAGGAGTTCTGGGGTTTTGAGGATGATCTGGATTATGAATATGATAGTTCATTTTCAATGTCTTTGATTGATTCCATTGGAAGTAACTAG 1161 0.4169 MKYMRSDSLKRIFFFRRSGSREHVLLPIGFNSEENDVKLEILPLPLEEPSHKPTWKCFSYEELFDATNGFSSENIVGKGGYAEVYKATLKNGEEIAVKRLTRTCRDERKEKEFLTEIGTIGHVHHSNVLPLLGCCIDNGLYLVFELSSRGTVSSLLHDEKLAPLDWKTRHKIALGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPKISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSYQSLHTWAKPILNKGEIEQLVDPRLEKAYDVTQLNRIAFAASLCIRASSTWRPTMSEVLEIMEEGEMDKEKWKMPEEEEEQEEEFWGFEDDLDYEYDSSFSMSLIDSIGSN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1656 386 PANTHER OS08G0249100 PROTEIN 46 366 - -
Lja4g1656 386 PANTHER OS04G0654600 PROTEIN 46 366 - -
Lja4g1656 386 SUPERFAMILY Protein kinase-like (PK-like) 50 337 IPR011009 -
Lja4g1656 386 SMART serkin_6 70 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1656 386 Pfam Protein tyrosine and serine/threonine kinase 73 335 IPR001245 GO:0004672|GO:0006468
Lja4g1656 386 ProSiteProfiles Protein kinase domain profile. 70 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1656 386 Coils Coil 97 117 - -
Lja4g1656 386 Gene3D Phosphorylase Kinase; domain 1 45 146 - -
Lja4g1656 386 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Lja4g1656 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lja4g1656 386 Gene3D Transferase(Phosphotransferase) domain 1 148 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1656 Lja-Chr4 15575284 15579719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1656 58 346 Trihelix Transcription Factor Family AT4G32710 46.512 2.69e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja4g1656 PK_Tyr_Ser-Thr 5.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1656 - - gmx:100305398 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1656 4 15575284 15579719 Lja4g1656 4 15575284 15579719 ECH
Lja4g1656 4 15575284 15579719 Lja6g2143 6 50316313 50319789 PCT