Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1654 ATGCCTGTTTCTACCGGAATTATCAAGTCACTTGAAATTAAGGATTGTCCTTTTCTGCTTCTCTTAATATATTCTTTTCTGGTAATTCTGCTTAACCTTGCTCTAATTGTTTGGGCTGTAAATTGCTGCCTGAGGTGTTTTCACAAAGATGTCAGCAGCACAGAGAATTCATGCTCACAATCTCAGACATTCAATGTATACAAATTCATGAACGACATGGAAAGAGAGAAGCTGATCAAGTTTACCTGTAAAGAGTTAAGGGTTGCTACTAACAATTTCTCTAAAAAATTGGGGTCAGGAGGATGTGGAACAGTGTATTTGGGAAATTTAAGCACTGGAGTCAATGTAGCTGTCAAGCAGTTCATGGCAGAGGTGAGTACAATTGGAAGGGCTCATCACTTGAATCTGGTTCGGCTCTATGGATTTTGCTTTGAATGGAAACTAAGAGCGTTAGTTTATGAGTATGTAGCGAATGGTTCGCTTGACAAGTATCTATTTCATGAAGGCGAGACCTTAGGATTCGAAAAGCTTCACGAGATTGCTGTTGGAACCGCGAGAGGCATTGCGTACTTGCACGAAGAGTGCCCCCAGCAAATAGTCCACTATGACATAAAACCAGGAAATGTTCTCTTAGATGAGAAATTTTCTCCTAAAGTTGCGGATTTCGGTCTCGCTAAGCTTTCTAATAGAGAAAACAAGCATATAACCATAACAGGAGGAAGGGGAACTCCTGGTTATGCTGCGCCGGAGCTTTGGTTTCCATTTCCCGTGACTCACAAGTGTGATGTTTACAGTTTTGGAATGCTGTTGTTTGAAATCATAGGTAGGAGAAGGAACTTTGATACTAGTCTTCCAGAAAGTCAAGAATGGTTTCCAAGGTGGGTTTGGGAAAAATTTGATTCTGGAAAACTGGAAGAGTTGAGAATAGCTTGTCGGAATGAGGAGAAAAATATGGAGATAGTAGAGAGAATGAGTAAGGTAGCTTTATGGTGTGTTCAGTACAGGTCAGAGTTGAGGCCTTTAATGAGTGGTGTGGTGAGAATGTTGGAAGGTGTAGTGGAAATTCCAAAACCTTTGAATCCTTTTCAAACCATGATGGTTGGGACTCTTCCTAACCAAACAAATCATCCATCAGATACCACTGTTTCTTCAGGTTGTGGCTGTGCTACTCCTATCTTGACAATACTTGATGTAGAATTGGCCTCTAGCTAA 1212 0.4084 MPVSTGIIKSLEIKDCPFLLLLIYSFLVILLNLALIVWAVNCCLRCFHKDVSSTENSCSQSQTFNVYKFMNDMEREKLIKFTCKELRVATNNFSKKLGSGGCGTVYLGNLSTGVNVAVKQFMAEVSTIGRAHHLNLVRLYGFCFEWKLRALVYEYVANGSLDKYLFHEGETLGFEKLHEIAVGTARGIAYLHEECPQQIVHYDIKPGNVLLDEKFSPKVADFGLAKLSNRENKHITITGGRGTPGYAAPELWFPFPVTHKCDVYSFGMLLFEIIGRRRNFDTSLPESQEWFPRWVWEKFDSGKLEELRIACRNEEKNMEIVERMSKVALWCVQYRSELRPLMSGVVRMLEGVVEIPKPLNPFQTMMVGTLPNQTNHPSDTTVSSGCGCATPILTILDVELASS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1654 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lja4g1654 403 PANTHER RUST RESISTANCE KINASE LR10-RELATED 32 370 IPR045874 GO:0004672
Lja4g1654 403 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1654 403 Pfam Protein tyrosine and serine/threonine kinase 93 348 IPR001245 GO:0004672|GO:0006468
Lja4g1654 403 Gene3D Phosphorylase Kinase; domain 1 51 155 - -
Lja4g1654 403 SUPERFAMILY Protein kinase-like (PK-like) 77 350 IPR011009 -
Lja4g1654 403 Coils Coil 304 324 - -
Lja4g1654 403 PANTHER PUTATIVE-RELATED 32 370 - -
Lja4g1654 403 Gene3D Transferase(Phosphotransferase) domain 1 156 358 - -
Lja4g1654 403 ProSiteProfiles Protein kinase domain profile. 91 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1654 Lja-Chr4 15559622 15561280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1654 78 382 Receptor kinase-like Gene Family AT5G38280 39.009 9.91e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Lja4g1654 PK_Tyr_Ser-Thr 5.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1654 - - jre:109002952 489.96