Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1638 ATGTCAGTAACCTTCAAAGGCTCTTACACGGTGAAACCCATTGAACCAACATGGTACGGTCGCTTAGCCTTATCTGAATGGGACCAAACAGGAGTTATAACTCATGTGCCAACCATCTACTTCTACCGCCCCTCACGTGACTCCTCCACCATGGCTACCACCTTGAGAGACTCTTTAAGCCGAGTCCTCGTCCCGTTTTATCCACTAGCTGGTCGTTTACAATGGACAGACGAAAACGACGGTCGTTTAGAGCTCGAGTGCAATGCAATGGGGGTTAAGTTCATCGAAGCAGAGTCCTCGCTAACATTAAACAACTTCGGTGACTTTTCATCTTCTTCAGAGTACCAACACCTCATCCCGAGCGTGGACTACACACTTCCGATTCACGTGTGGCCTTTGTTTCTAGTTCAGTTCACGAGGTTTGCATGTGGTGGCGTTTGTATCAGCTTCCAAGTCTCGCATGCGGTTGTGGATGGACCAAGCGCATTGCATTTCATTTCAGAGTGGGCCAGGCTCGCACGCGGCGAGCCTCTGCAAACGACGCCGTTTCTTGACCGGAAAGTGCTGCGTGCGGGGGAGCCTCCGTTAATGGAAGCAAACCAAGGTCAATGGACGTTCAATTTCAACCTCCCTACTCTACTTCTAGACAAAACAGAGGAAAAACAAGGGATGAAGAAAAAGAAGAAGAAAAACTCTTTGGCTACCCTTAAAGTGAGCAAAACCCAAGTTGAGAAATTGAGAAAGGAAGCAAATGAGGGTTTTGATGGTTCTACCAACGTACGTGGTTACACGAGGTACGAGGCTGTAACTGGACACATGTGGAGAAGTGCATGCAAAGCTAGGGAGCACAAACATGACCAACCAACGGCGTTGGGTGTGAGCGTTGACATGAGGCGTCGTGTACAACCTAATTTACCAAAAGGGTATTTCGGGAATGCAACTTTTGATGTGGTGGCTACCGGTGTTGCTGGCGACCTAGTTTCAAAGCCTTTGGGGTATGTGTCGGGGAGGATAAGGGAGGCGATTGAGAAGGTGGATGATGAGTACGTGAGGTCGGGGATTGAGTTCTTGAAAGAGCAGAGGGATTTGACAAAGTTTCAAGATTTTCATACGACGGAGAGTGAAAATGGAGCATTTTATGGGGACCCGAATCTTGGGGTGTTTAGCTGGTTGACGTTGCCGATTTATGGGGTTGATTTTGGGTGGGGGAAGGAGATTTTCATGGGTCCAGGAACACATGATTTTGATGGAGATTCTCTACTTCTTCCTGGTCCAGTTGAAGATGGATCTTTGCTCATTGCTATTTGTCTGCAAGAGATTCATATGGAGGCCTTTAAAAAGCATTTTTACGAAGGCATTATGTATATAAAATGA 1374 0.4716 MSVTFKGSYTVKPIEPTWYGRLALSEWDQTGVITHVPTIYFYRPSRDSSTMATTLRDSLSRVLVPFYPLAGRLQWTDENDGRLELECNAMGVKFIEAESSLTLNNFGDFSSSSEYQHLIPSVDYTLPIHVWPLFLVQFTRFACGGVCISFQVSHAVVDGPSALHFISEWARLARGEPLQTTPFLDRKVLRAGEPPLMEANQGQWTFNFNLPTLLLDKTEEKQGMKKKKKKNSLATLKVSKTQVEKLRKEANEGFDGSTNVRGYTRYEAVTGHMWRSACKAREHKHDQPTALGVSVDMRRRVQPNLPKGYFGNATFDVVATGVAGDLVSKPLGYVSGRIREAIEKVDDEYVRSGIEFLKEQRDLTKFQDFHTTESENGAFYGDPNLGVFSWLTLPIYGVDFGWGKEIFMGPGTHDFDGDSLLLPGPVEDGSLLIAICLQEIHMEAFKKHFYEGIMYIK* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1638 457 SUPERFAMILY CoA-dependent acyltransferases 108 182 - -
Lja4g1638 457 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 5 452 - -
Lja4g1638 457 Gene3D - 1 205 IPR023213 -
Lja4g1638 457 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 452 - -
Lja4g1638 457 Pfam Transferase family 1 451 - -
Lja4g1638 457 Gene3D - 220 452 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1638 Lja-Chr4 15409166 15410539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1638 1 451 Monolignol Biosynthesis Gene Families AT5G48930 39.514 6.71e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1638 K13065 - gmx:100777007 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1638 4 15409166 15410539 Lja4g1638 4 15409166 15410539 ECH