Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1622 ATGCGGGATAGTGACAAGAAGTTAAATAGAGGAGGACCGAAAAAGTCCGGTCTTCTGAAGGCGCTCAAAAAGTGTCAAGGGAAGAAGCATAAAATGAAATCAAGATCTCGTACTAACAGCGTTGGTACTAATATATCAAGGAAGAGAGTTACTGACTCCTCCCTCAAGGGGCCGCACAAGGATTCTTCAAATAAGAAATTGGTTAGTAGACAGAAATTACATAAAACTGACAGAAAATCTTCACAGAAGTCGTCGTCAAAGCTACAAGGTAAAAAAGTTTCTCTCGGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTACAAAAATTAAAGAGAAGGAGAAAGAAGAAAAGGCAAAAGAATAATGTAGATGTCGATGAAGCTTCGCGCTTGCAGAGGAGAACGAGGTACCTTTTAATCAAAATGAAACTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCTCGAAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCACCAATTGGATTCTCTTAGTTCCTCAAGTAGCATTGAAGATTCTGTCATTGATCCAGACCATGAACATATATTATGTGCAAAGTGCAAGTTGCGTGAAGATCTTCCGGATAATGGTATTATACTGTGTGATGGGACATGTAATCGTGCCTTTCACCAAAAATGTCACGATCCTCCTTTAGACAGTGAAGATATTCCTGAAGGAGACCAGGGCTGGCTTTGTAAATTTTGTGCATGTAAGATGGAAATTCTTGGTGCAATGAATGCCCATCTTGGAACTCGCTTCTCCTTGCACAGTGATTGGCAGGATGTGTTCAAAGAAGAGGCTTCTCTGCCTGATGGTGATGTTGCGTCACTGAATCCTGAAGCAGAATGGCCATCAGATGATTCTGAAGATGATGATTATAATCCAGAGAGGGCAGAAGACAGCCGCAATATCAACACAGAAGAAAGTGATCATAATGCATCTGATGATTCAAGCAGTTCCACCAGTCTGTGTTCTTCTGACAGTGAATGTTCTCCACTAGATGATGGTGTTAACCATGAACACTTTTCTGTCAATAGTAGCGTAGATTCTGATGAGTCTGACGAGAAGGAATGTGGTCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCTTGCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCAGGTAAAAGAAAGCGCAGAGAAAAGGAGTGTGATGCTGTTGATACTCTCATGACTTTACACGAAAGTGAGAATAAAAATCCCAATAATGGGCACAACAGTAAGACCAGAGGGGGTTCTTTGGGCGTAAATATAAGAAGACCTAATTTTAGGATTCCCCATAATGCGGTTGAGAGGCTTCGCCAAGTTTTTGCAGAGAATGAACTTCCTCCAAGATCTATAAGGGAAAGTCTTTCAAAAGAGTTGGGACTTGAGATTCAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACACAGCGCTTAAAACCAGAAAACTGCAAGCAGGTTCAGATCAGCTTCAAAATATCACTTCTAAGAGCTCTAGATTACTAAACCAGGAGAAAGCTGATCCTTTGGAATCAAAGACCTCACTTACTATCACCCATTCGCCGAAGAATGTTAAAAATGCCACTGATGGAAAGAAAATACAGCCATCTAGCAGTCCTCTCCAGGGAACACAACGAAAATTATCTTCAACTCAGCCAAGAGAAAATGGCAACAAGGACTTCATGGAGGACAGTGATGATGTGAGCTTGAAGAACTTGTTGAAAAAAAGAAAGAGGAAAGTAAATTTTACATCTGAAGGAGACTATCAGGCTGCAGAGAAAGAATTTGAGAGACTAAGCAGATTGAAGATTAAACTAGATAGTATGAAGCAAAAACTAACTGGAATTCAAAAACAGAGAGTAAAAGATTCAGTTGAACCACATTCGAATGAACCATCTATTATATATGTACCCATAGCTGTGTTAAGGGAGAAGGTTGAATAA 2091 0.4041 MRDSDKKLNRGGPKKSGLLKALKKCQGKKHKMKSRSRTNSVGTNISRKRVTDSSLKGPHKDSSNKKLVSRQKLHKTDRKSSQKSSSKLQGKKVSLGSRKEGKDADGEVKLQKLKRRRKKKRQKNNVDVDEASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCKLGIRDAIHQLDSLSSSSSIEDSVIDPDHEHILCAKCKLREDLPDNGIILCDGTCNRAFHQKCHDPPLDSEDIPEGDQGWLCKFCACKMEILGAMNAHLGTRFSLHSDWQDVFKEEASLPDGDVASLNPEAEWPSDDSEDDDYNPERAEDSRNINTEESDHNASDDSSSSTSLCSSDSECSPLDDGVNHEHFSVNSSVDSDESDEKECGRRQRKAVDYKKLYDEMFGKDALACEQVSEDEDWGPGKRKRREKECDAVDTLMTLHESENKNPNNGHNSKTRGGSLGVNIRRPNFRIPHNAVERLRQVFAENELPPRSIRESLSKELGLEIQKVSKWFKNARYTALKTRKLQAGSDQLQNITSKSSRLLNQEKADPLESKTSLTITHSPKNVKNATDGKKIQPSSSPLQGTQRKLSSTQPRENGNKDFMEDSDDVSLKNLLKKRKRKVNFTSEGDYQAAEKEFERLSRLKIKLDSMKQKLTGIQKQRVKDSVEPHSNEPSIIYVPIAVLREKVE* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1622 696 MobiDBLite consensus disorder prediction 37 51 - -
Lja4g1622 696 SUPERFAMILY FYVE/PHD zinc finger 212 274 IPR011011 -
Lja4g1622 696 CDD PHD_PRHA_like 217 269 IPR045876 -
Lja4g1622 696 MobiDBLite consensus disorder prediction 21 36 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 379 396 - -
Lja4g1622 696 Pfam Homeodomain 478 525 IPR001356 GO:0003677
Lja4g1622 696 Coils Coil 641 668 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 93 111 - -
Lja4g1622 696 ProSiteProfiles Zinc finger PHD-type profile. 215 272 IPR019787 -
Lja4g1622 696 MobiDBLite consensus disorder prediction 304 396 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 1 130 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 553 605 - -
Lja4g1622 696 CDD homeodomain 473 525 IPR001356 GO:0003677
Lja4g1622 696 Pfam PHD-finger 218 272 IPR019787 -
Lja4g1622 696 MobiDBLite consensus disorder prediction 449 467 - -
Lja4g1622 696 PANTHER POLYCOMB PROTEIN PCL 19 669 - -
Lja4g1622 696 ProSitePatterns Zinc finger PHD-type signature. 218 269 IPR019786 -
Lja4g1622 696 ProSiteProfiles 'Homeobox' domain profile. 470 530 IPR001356 GO:0003677
Lja4g1622 696 SMART PHD_3 217 270 IPR001965 -
Lja4g1622 696 MobiDBLite consensus disorder prediction 449 473 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 349 366 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 52 84 - -
Lja4g1622 696 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 19 669 - -
Lja4g1622 696 SMART HOX_1 472 534 IPR001356 GO:0003677
Lja4g1622 696 MobiDBLite consensus disorder prediction 553 613 - -
Lja4g1622 696 Gene3D - 472 537 - -
Lja4g1622 696 MobiDBLite consensus disorder prediction 329 348 - -
Lja4g1622 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 279 IPR013083 -
Lja4g1622 696 SUPERFAMILY Homeodomain-like 469 533 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1622 Lja-Chr4 15189399 15193777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1622 124 535 Homeobox Transcription Factor Family AT4G29940 55.607 8.17e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lja4g1622 Homeodomain 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1622 - - gmx:100817639 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1622 4 15189399 15193777 Lja4g1622 4 15189399 15193777 ECH
Lja4g1622 4 15189399 15193777 Lja6g2095 6 49540247 49552376 PCT