Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1617 ATGAATCTAGAAATGTCTTCTTCGTGTTTGAGTGGTGCAGGAGGAAGAGCAACCTACGGATTCGATTTGGATTTTGTTAAATCTCCATCTTCATGGAGCAGAACCTCACAGTCATCTTCTTCACCTTCTTCCACCATCTCTGAATCCAGCAATTCCCAATTAGCAATCGCCACCAGAAAACCCAGAACCCCTCGGAAACGACCCAACCAAACCTACAACGAAGCCGCCGCGCTTCTCTCCACCGCCTACCCCAACCTCTTCTCCACCAAGACCCTCAAACAAACACCGTCACCAACCAATCACAATTTCATCAAGGAAGCATCAGCAGCAGAATCATCGGAATTGCTTTTCCCTTTCAGGGTTTTGGACACGTCGTCATCGTCTTATCTACTTCACGGCCCAATCCAGCACAACCCACCGCCGCCGGAGCTCAAGGCGGTGGGTGTGGTGCCGGAGAAGCCGTGTCGGAGCCCCGGGGAGATAAGCTCCAGGGTGAATTTACTCGATTTGGTGGAGGATGATTGCGGAGATGATTTCGATGCCGAATCGATTCTCGACGAGGAAATCGAGGAAGGGACGATTGACAGCATCATGGGAGGGAGGGTTCAGGAGGATTCCGACGGAGCTTCCTGGCAACACCACCCGTGGATTGGATTTGGCGGGAAATTCGATTTCCGGCTAGGGTTTCCGAGGGCTGGAGTCAGGGCTCTCCGCTGCCATGTCGATGACGGCGATTGGTGGAACTTTCCGCCGGTTGACATCCTCCAGATTTCGCCCAAGATTATCGGCGGCGGTGGAAGCAAACATCCGCCGGAGAAGAAGAAAAAGAAGAAGGTGGCGGTGGCTGCGGTGGCGGAGAAACCGAAGGTGGAGTTGAACGAAGCGGAATTGCCGAAAGCGAACGCTAGTTTGATGTTGAAACTGAATTACGACGACGTTCGGAGTGCTTGGTCTGGCCGGGGCTCGCCGTTCTCCGATGACAGCCCCGCCTCCGATGCGCCGGGAAATGACGTCACGGCACGGCTATCACAAATTGATTTATTGTGGGACAATGGCGGAGTGAGGGAAGCTAGCGTGCTTCGCTACAAAGAGAAGCGACGTACGCGGCTGTTCTCGAAGAAGATCAGATACCAGGTCAGAAAAGTCAACGCAGATCGACGGCCTAGAATGAAGGGGCGATTTGTTACGAGGCTGAATTCTAGCTCAAATGCACACAGATGA 1221 0.5324 MNLEMSSSCLSGAGGRATYGFDLDFVKSPSSWSRTSQSSSSPSSTISESSNSQLAIATRKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKTLKQTPSPTNHNFIKEASAAESSELLFPFRVLDTSSSSYLLHGPIQHNPPPPELKAVGVVPEKPCRSPGEISSRVNLLDLVEDDCGDDFDAESILDEEIEEGTIDSIMGGRVQEDSDGASWQHHPWIGFGGKFDFRLGFPRAGVRALRCHVDDGDWWNFPPVDILQISPKIIGGGGSKHPPEKKKKKKVAVAAVAEKPKVELNEAELPKANASLMLKLNYDDVRSAWSGRGSPFSDDSPASDAPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVTRLNSSSNAHR* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1617 406 Pfam CCT motif 355 396 IPR010402 GO:0005515
Lja4g1617 406 PANTHER OS02G0148000 PROTEIN 5 401 - -
Lja4g1617 406 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 401 - -
Lja4g1617 406 MobiDBLite consensus disorder prediction 28 58 - -
Lja4g1617 406 ProSiteProfiles CCT domain profile. 355 397 IPR010402 GO:0005515
Lja4g1617 406 MobiDBLite consensus disorder prediction 28 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1617 Lja-Chr4 15141371 15145234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1617 304 397 C2C2-CO-like Transcription Factor Family AT1G25440 47.826 1.82e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g1617 CCT 2.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1617 - - aprc:113845796 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1617 4 15141371 15145234 Lja4g1617 4 15141371 15145234 ECH