Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1612 ATGACAAACAAGACAGTGTTGCCCAGTAGTCAATCAAAAGATTCCAATGCTGTGAAGGGACGTAGCAAGAATCGAAGTGGAAAAACAGAAATGATTGATTTAAGATCACTTCTGGTCCTTTGTGAACTAGCTGTTGCCGCAGATGACTATAGGAATGCGCATGAGTTGCTAAAGAAAATCAGGCATCACTTAAATGCTTTTGCGGATGGAAATCAGAGGTTGGCTCATATCTTTGCAGATGGTCTTGAGGGGCAATTGGCTGGCCCCGGAAGCCAAATATGTAAAGGAATTGTTAGCAAAAGAACATTAGCTGCTGATATTCTAAAAGCCTATAATCTATTCCTTCCTGCGAAAACAGGAGGACCACCAAAGCTTCAGATTACAGGAATAGACTTCCCACAACCTGGTTTCATGTCTGCACAGAGAGTTATATTAACGATGTATCATTTTCCCACTTCCTTAAACATAGAAAACAACAATGAAAAAATGCTTAGGTGGGAAGCTGAAAGAAAGAATCATCATGCAAAGTGCATGAACAAGGTGAGGTGGCCTTTTTTTTCGGAGGAAGGGCTACGTGTGTTGATGGCTTTCAAACAAATGCATGTGAGGGAGAGCCTCGCCCCACTCTTCAACCGTGAAAACTCATGCCTTTTAGCTACCAAGACACCACTTTCACAATTCATTCTTGCACTCGCCAGCTCTAGAGAATGA 711 0.4219 MTNKTVLPSSQSKDSNAVKGRSKNRSGKTEMIDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGSQICKGIVSKRTLAADILKAYNLFLPAKTGGPPKLQITGIDFPQPGFMSAQRVILTMYHFPTSLNIENNNEKMLRWEAERKNHHAKCMNKVRWPFFSEEGLRVLMAFKQMHVRESLAPLFNRENSCLLATKTPLSQFILALASSRE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1612 236 PANTHER SCARECROW-LIKE PROTEIN 9 117 144 - -
Lja4g1612 236 PANTHER SCARECROW-LIKE PROTEIN 9 18 117 - -
Lja4g1612 236 ProSiteProfiles GRAS family profile. 25 236 IPR005202 -
Lja4g1612 236 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g1612 236 Pfam GRAS domain family 34 114 IPR005202 -
Lja4g1612 236 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 117 IPR005202 -
Lja4g1612 236 MobiDBLite consensus disorder prediction 1 17 - -
Lja4g1612 236 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 117 144 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1612 Lja-Chr4 15094840 15103482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1612 25 143 GRAS Transcription Factor Family AT2G37650 46.341 1.23e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g1612 GRAS 2.1e-09 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1612 - - lja:Lj4g3v2139210.1 237.269