Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1609 ATGTCTCGGACGCTAGTGCAGCCGATCGGCCAGAAGAGGCTAACCAACGTCGCGGTGGTGCGTCTGAAGAAGCACGGCAACCGCTTCGAAATCGCGTGCTATCCCAACACCGTCCTCGCTTGGCGTTCCGGCGTCGAGAAGGACATCGATGAAGTATTGCAGTCTCACACCGTCTATACCAATGTCTCCAAAGGCGTTCTCGCCAAGTCAAAGGATCTCACCGCCGCTTTCGGTACCGATGATCACTCCGCCATTTGCTTACAGATTTTGAAGAAGGGGGAGCTTCAGGTTGCTGGTAAAGAGAGGGAGTCGTTGCTGTCTAGTCAGTTTAGGGACATCGCCACCATTGTGATGCAGAAGACCTACAATCCAGAGACTCAGCGCCCTTACACTATCAGTATGATCGAACGCCTTATGAAGGAAATCCATTTTGCTGTTGATCCACACAGCACTTCCAAGAAGCAGGCTTTGGAGTTGATTCAGGAGCTTCAAAAGCATTTCCCTATAAAAAGGTGTCCATTAAGAATACGCGCTGCTGCTCCTGAGGAGCAAGTGCCTGCCCTTTTAGAGAAGCTGAGTGAGTGGAAGGCAATTGTTATTTCTAAAGAAGGATCTGCTTCTCAGTTATCTGTTATTTTTGAATTGGAACCTGGTCTATATAAGGACTGTCATGATTTCATAATGGATAAAATGCACGGAAGATTTGAAGTTCTTGCGCACTCTCTTTATGTGGAGGGGGATACCCAGGTAGATCAATACAATGATGATGAGGATATGCATGCACCATTGTCCAAAGAAACAAGTGAATCTGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCATCTACAAGCAAGCCAGCAGAGGGACAACAATCAAAGCAAAACAAGTGCAACACATGTAATGTTTCTTTTGAAGACTCTAAGCTGTACAGGGAACACCACAAGACTGACTGGCACAAGCACAATATGAAGCGCAAGACAAGGCAACTCCCACCGCTTACGGAAGAAGAGTGCATGGAAGATATGGAGTTGGGTGACTCAAAATCTGATTTAAAGGATTATTCATTTTGA 1080 0.4583 MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNTVLAWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLTAAFGTDDHSAICLQILKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPETQRPYTISMIERLMKEIHFAVDPHSTSKKQALELIQELQKHFPIKRCPLRIRAAAPEEQVPALLEKLSEWKAIVISKEGSASQLSVIFELEPGLYKDCHDFIMDKMHGRFEVLAHSLYVEGDTQVDQYNDDEDMHAPLSKETSESVLELNDKLQKQTISSTSKPAEGQQSKQNKCNTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTEEECMEDMELGDSKSDLKDYSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1609 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Lja4g1609 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Lja4g1609 359 Gene3D - 174 251 - -
Lja4g1609 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Lja4g1609 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Lja4g1609 359 MobiDBLite consensus disorder prediction 338 359 - -
Lja4g1609 359 Gene3D - 1 96 IPR036786 -
Lja4g1609 359 Gene3D - 100 172 IPR037188 -
Lja4g1609 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Lja4g1609 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Lja4g1609 359 Gene3D Classic Zinc Finger 287 348 - -
Lja4g1609 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Lja4g1609 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Lja4g1609 359 SUPERFAMILY beta-beta-alpha zinc fingers 294 342 IPR036236 -
Lja4g1609 359 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Lja4g1609 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1609 Lja-Chr4 15080330 15082709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1609 28 359 C2H2 Transcription Factor Family AT1G43860 59.593 2.62e-146 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g1609 SBDS_C 1.2e-26 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1609 K14574 - gmx:100797497 646.736