Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1606 ATGGCAGAAGAAGAGGAAGAAGCAAAAGCTCTCAACTCTATTCCAGAGGAGAAGAAGAAGAAGAATAATAAGAAGAGGAAACGCAGCAGCGAAGCAAATGAGAAATTTCAATCCAGGAAGGTCAGTGAGTTAGATATGGAGAAAAAGAAGAATAAGAAGAAGAGGAAACGCAGCCTCAGGGTAGATATGGAGAAATTTCAAACCATTATGGTCAGTGAGAAAAAATACATCCATCCTATAACCAGAAAGGTCTTATTCAGCTTGGGGTTGAGAAGACTATTCAGTGCAGTTTTTGTGAAGTCAACTGAGCAAATCATGAGCAAACTGCAGAGAGTGGCACCATATGTTACCTATGGATATCCAAATCTTGAAAGCATAAAGGAGCTACTTTACAAGAAAGGACATGCAAAAATAGACGAGCGAAAGGTTTCTTTGACGGATAGTATTATTGGGCAGGAATTAGGTAAGTTTGGTATTTTATGCATGGAAGACATGGTGCATCAAATTTATAATGTTGGTCCCCACTTCAAGGAAGTCGTCAGATTTATATGGCCCTTTGAACTCAACAAACCTTCAGATGGATTTAAGGGATCAAAAACCTTATTCAAGAATGGTGGAGATGCAGGGAACCGTGAGGATTCCATCAACGAGTTAATCAATAAGATGATGAATTAA 675 0.3881 MAEEEEEAKALNSIPEEKKKKNNKKRKRSSEANEKFQSRKVSELDMEKKKNKKKRKRSLRVDMEKFQTIMVSEKKYIHPITRKVLFSLGLRRLFSAVFVKSTEQIMSKLQRVAPYVTYGYPNLESIKELLYKKGHAKIDERKVSLTDSIIGQELGKFGILCMEDMVHQIYNVGPHFKEVVRFIWPFELNKPSDGFKGSKTLFKNGGDAGNREDSINELINKMMN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1606 224 MobiDBLite consensus disorder prediction 1 19 - -
Lja4g1606 224 CDD Ribosomal_L7_archeal_euk 77 222 IPR035808 -
Lja4g1606 224 MobiDBLite consensus disorder prediction 1 58 - -
Lja4g1606 224 PANTHER 60S RIBOSOMAL PROTEIN L7-1 16 222 - -
Lja4g1606 224 Pfam Ribosomal protein L30p/L7e 78 116 IPR016082 -
Lja4g1606 224 PANTHER 60S RIBOSOMAL PROTEIN L7 16 222 IPR039699 -
Lja4g1606 224 SUPERFAMILY Ribosomal protein L30p/L7e 77 223 IPR036919 -
Lja4g1606 224 MobiDBLite consensus disorder prediction 27 49 - -
Lja4g1606 224 Gene3D - 67 223 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1606 Lja-Chr4 15051970 15055434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1606 4 222 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 43.805 6.88e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1606 K02937 - gmx:100500005 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1606 4 15051970 15055434 Lja4g1606 4 15051970 15055434 ECH