Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1603 ATGAATTGCGATTTAGAAGCTGGGTCTCCCACTGATTTTGACGGCGGAGACTGCTCGTCTGACCCATTTGATGTTACCAGAACAAAGAATGCTCCTGTTCAGCGACTCAGACGTTGGAGGCAAGCCGCGCTTGTGCTTAATGCTTCTCGTCGGTTTCGTTACACCTTGGACTTGAAGAAAGAAGAAGAGAGGAAGCAAATATTGAAATTGATTATAGTGCATACACATGCCATTCAAGCAGCATATCGTTTCAAGGCAGCTGGGGAGAAAACGGATGGAACCGTAATACCTCCATCAAGCTCCCCTGGAGAATTTTTAATTGGACAAGAGAAATTGTCTTCGGTCTCAAGGGATCACGATACAACTGCTCTGCAGGAATATGGAGGGGTTGTAGGGTTGTCACAATTGTTAAAAACTAACTTAGAGAAGGGGATTAAATGTGATCCTGCTGAATTGGTAAAACGAAGAAATGCATTTGGTTCGAACAACTACCCTCGAAAGAAAGGAAGAAGTTTTTTGATGTTTATCTGGGATGCTTGCAAGGACCTGACCTTGATTATTTTAACGGTAGCTGCCATAGCTTCATTAGCATTAGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCCGTAGCAGTTATTCTTGTTATTCTTGTTACAGCAATATGTGATTATAAGCAATCTCTTCAATTTCAAGACCTAAATGAGCATAAAAGAAACATACATTTGGAGGTTATTAGAGATGGTAGAAGAGTTGAGATCTCTATATATGATGTTGTTGTTGGTGATGTTGTACCCCTTAATATTGGTGATCAGGTCCCTGCCGATGGAATTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAGATTGTCAATAAGCATTCTAAGGAACCTTTTCTGATTGCTGGATGTAAAATTGCAGATGGAAGTGGCACTATGTTGGTAACCGCAGTTGGTATTAATACTGAGTGGGGGCTTCTAATGGCTAGCATTTCAGAGGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTTGCCACCTTCATTGGTATTACTGGACTCTCCGTGGCTATCGTTGTTCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTACAGCAGGCAAGACCAAGGTCGGTGACGCTATTAATGGAACAATTAAGATAGTCACTGTTGCGGTCACGATTGTAGTGGTTGCCGTGCCTGAAGGGCTCCCTCTCGCAGTTACCTTAACACTGGCCTTCTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACTATGGGGTCGGCCACAATTATTTGCACTGATAAGACTGGAACTCTGACTATGAATCAGATGACTGTTGTTGAGGCTTGCATTGGTGGGAAAAAGATTGATCCTCACGAGAAATCACAGCTCTCACCTATGCTCTGTGCTTTGATGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTGCCTGAGAGCGGTAATGATATTGAGGTTTCTGGATCACCAACAGAGAAAGCAATTTTACATTGGGGTATTCAGCTTGGGATGGATTTTGAGGCTGCCAGATCAGAATCATCAATTATCCATGTCTTTCCATTCAATTCAGACAAAAAACGAGGTGGAGTTGCAATACAAACGGTTGATGCTGAAATCCACATACATTGGAAAGGTGCTGCTGAGATAATCCTTGCTTGCTGTACAGGTTATATGGATGCAAATGATCAGTTGGTGGAAATGGATGAGGAGAAGATGACAGTTTTTAAAAAAGGTATTGAAGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATTATATGAAATGGAGAATGTTCCAGCTAGTGAAGAAGATCTTGCTCACTGGTCACCGCCAGAGGATGATCTCGTTTTACTGGCTATTCTTGGTCTGAAGGATCCTTGTCGACCAGGTGTTAAAGATGCAGTGCAGCTTTGCCAAAAATCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTTGCTGAGGCTACAGAGCCAAACATCATTGAAGGAAAAACATTCCGTGCCTTGTCTGATAAAGAGAGAGAAGAAATTGTTGAAAGGATATCGGTTATGGGACGGTCATCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTAAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCAGCACTGCATGAGGCCGATATTGGTCTTGCAATGGGTATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCATCAGTTGTGAAGGTTGTTAAATGGGGGCGGTCAGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGCTATAAATGTTGTTGCTGCATTTTCATCTGGTGATGTCCCACTAAATACAGTGCAGCTTCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACAGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGAGAACCTCTTGTTACAAATATTATGTGGAGGAATCTGCTGATACAGGTGAATTCCGTTTCTCATTTATCAGTGCCCCTGTTGCCACTGTGGTTGCCAGGGATTTTGCTTTTACATGGGCTAGGCCACCAAAGGTCAATTAATGAATGTTGA 2856 0.424 MNCDLEAGSPTDFDGGDCSSDPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEERKQILKLIIVHTHAIQAAYRFKAAGEKTDGTVIPPSSSPGEFLIGQEKLSSVSRDHDTTALQEYGGVVGLSQLLKTNLEKGIKCDPAELVKRRNAFGSNNYPRKKGRSFLMFIWDACKDLTLIILTVAAIASLALGIKSEGIKEGWYDGGSIAVAVILVILVTAICDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVVPLNIGDQVPADGILITGHSLAIDESSMTGESKIVNKHSKEPFLIAGCKIADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATFIGITGLSVAIVVLIVLLARYFSGHTRNPDGSVQFTAGKTKVGDAINGTIKIVTVAVTIVVVAVPEGLPLAVTLTLAFSMKKMMADKALVRRLSACETMGSATIICTDKTGTLTMNQMTVVEACIGGKKIDPHEKSQLSPMLCALMIEGVAQNTNGSVYVPESGNDIEVSGSPTEKAILHWGIQLGMDFEAARSESSIIHVFPFNSDKKRGGVAIQTVDAEIHIHWKGAAEIILACCTGYMDANDQLVEMDEEKMTVFKKGIEDMAADSLRCVAIAYRLYEMENVPASEEDLAHWSPPEDDLVLLAILGLKDPCRPGVKDAVQLCQKSGVKVKMVTGDNVKTAKAIAVECGILGSFAEATEPNIIEGKTFRALSDKEREEIVERISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRREPLVTNIMWRNLLIQVNSVSHLSVPLLPLWLPGILLLHGLGHQRSINEC* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1603 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 128 924 IPR023298 -
Lja4g1603 951 PANTHER CALCIUM-TRANSPORTING ATPASE 16 940 - -
Lja4g1603 951 SFLD p-type atpase 452 829 IPR044492 -
Lja4g1603 951 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Lja4g1603 951 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Lja4g1603 951 PRINTS P-type cation-transporting ATPase superfamily signature 670 681 - -
Lja4g1603 951 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Lja4g1603 951 PRINTS P-type cation-transporting ATPase superfamily signature 470 484 - -
Lja4g1603 951 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Lja4g1603 951 Gene3D - 480 677 IPR023299 GO:0000166
Lja4g1603 951 PANTHER CATION TRANSPORTING ATPASE 16 940 - -
Lja4g1603 951 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 477 674 IPR023299 GO:0000166
Lja4g1603 951 Pfam E1-E2 ATPase 248 448 - -
Lja4g1603 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 743 857 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g1603 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 410 499 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g1603 951 Gene3D - 467 822 IPR023214 -
Lja4g1603 951 Gene3D - 178 918 - -
Lja4g1603 951 Pfam Cation transporting ATPase, C-terminus 862 917 IPR006068 -
Lja4g1603 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 472 478 IPR018303 -
Lja4g1603 951 Pfam Ca2+-ATPase N terminal autoinhibitory domain 20 63 IPR024750 GO:0005516
Lja4g1603 951 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g1603 951 Pfam Cation transporter/ATPase, N-terminus 128 195 IPR004014 -
Lja4g1603 951 Gene3D - 150 346 - -
Lja4g1603 951 SUPERFAMILY HAD-like 468 882 IPR036412 -
Lja4g1603 951 Gene3D - 32 86 - -
Lja4g1603 951 SMART Cation_ATPase_N_a_2 126 200 IPR004014 -
Lja4g1603 951 PRINTS Sodium/potassium-transporting ATPase signature 588 606 - -
Lja4g1603 951 PRINTS Sodium/potassium-transporting ATPase signature 849 870 - -
Lja4g1603 951 PRINTS Sodium/potassium-transporting ATPase signature 463 484 - -
Lja4g1603 951 PRINTS Sodium/potassium-transporting ATPase signature 213 233 - -
Lja4g1603 951 CDD P-type_ATPase_Ca_PMCA-like 154 910 - -
Lja4g1603 951 SUPERFAMILY Calcium ATPase, transduction domain A 248 343 IPR008250 -
Lja4g1603 951 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 119 917 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja4g1603 951 Pfam haloacid dehalogenase-like hydrolase 468 791 - -
Lja4g1603 951 SFLD Haloacid Dehalogenase 452 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1603 Lja-Chr4 15009424 15019787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1603 4 940 Primary Pumps ATPases AT4G29900 70.319 0.0 1333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1603 K01537 - gmx:100790157 1518.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1603 4 15009424 15019787 Lja4g1603 4 15009424 15019787 ECH
Lja4g1603 4 15009424 15019787 Lja6g2083 6 49360036 49373246 PCT