Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1598 ATGAAGATGGAAGAGCAAATCGCTATTCAAGAAGCTGCTTCTGTTGGTTTGAAAAGCATGGAGCATCTCATTCGGATTCTCTCTTCTCAAACCCCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCCATAACCGCCACCGTCTTGATCTCAATAACCTTGACTGCACCGAAATCACTGACTTCACTGTCTCAAAGTTCAAGCAAGTCATCAATCTGTTGAACCGTACCGGCCACGCGCGCTTCCGTCAAGCGCCGTCGCCTTCCCCTGCTCCTCCTCCTCCTCTGTCTCAGCCTCAACCTGAGAAATTCAACAGCCACCAATTCAACAACCACCATCGGTCAACGACTCTTGATTTTGCTAAACCTGTAATGGTCAAGTCAAATCTAAAACCAGATCTAATTTCTAAGCCAAAACTGTCCACTGATTTGTCGGTTTCTCAATACTCCACCACCACCACCACCACCAACTCCTCCTTCATGTCCTCCATCACCGGAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCCGGCAGGCCACCTCTCTCGTCTTCTCACCGGAAAAGGTGTCACGACGCCACCCTCACCGGAAAAACCTCATCCTCCGGTAGCCGCTGCCACTGCTCCAAAAAAAAGAAATTGCGTGTGAAACGAACGATTCGAGTCCCGGCGATAAGTTCAAAGACTGCTGATATTCCAACAGATGATTTCCAATGGAGAAAATATGGTCAGAAACCGATCAAGGGATCACCCTATCCACGGGGATACTACAAATGTAGCAGTGAGAAAGGGTGTCCGGCGAGGAAGCATGTGGAGAGAGCGCAGGATGATCCTAACATGCTCATCGTTACCTATGAGGGAGAGCACCGGCACCTGATAACCACCACCGCCGCCGTTGGTTTTATGGCCTGA 933 0.4995 MKMEEQIAIQEAASVGLKSMEHLIRILSSQTPSFSSSSSSSSSSSHNRHRLDLNNLDCTEITDFTVSKFKQVINLLNRTGHARFRQAPSPSPAPPPPLSQPQPEKFNSHQFNNHHRSTTLDFAKPVMVKSNLKPDLISKPKLSTDLSVSQYSTTTTTTNSSFMSSITGEGSVSNGKIGLAIVAAGRPPLSSSHRKRCHDATLTGKTSSSGSRCHCSKKKKLRVKRTIRVPAISSKTADIPTDDFQWRKYGQKPIKGSPYPRGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRHLITTTAAVGFMA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1598 310 Gene3D WRKY domain 226 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1598 310 Pfam Plant zinc cluster domain 194 238 IPR018872 -
Lja4g1598 310 SUPERFAMILY WRKY DNA-binding domain 236 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g1598 310 ProSiteProfiles WRKY domain profile. 235 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1598 310 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1598 310 MobiDBLite consensus disorder prediction 88 102 - -
Lja4g1598 310 MobiDBLite consensus disorder prediction 30 50 - -
Lja4g1598 310 MobiDBLite consensus disorder prediction 83 112 - -
Lja4g1598 310 MobiDBLite consensus disorder prediction 187 213 - -
Lja4g1598 310 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 2 308 - -
Lja4g1598 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 308 IPR044810 GO:0003700
Lja4g1598 310 SMART WRKY_cls 240 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g1598 310 MobiDBLite consensus disorder prediction 30 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1598 Lja-Chr4 14920308 14921456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1598 2 298 WRKY Transcription Factor Family AT2G24570 50.000 6.45e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g1598 WRKY 8.7e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1598 - - gmx:732587 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1598 4 14920308 14921456 Lja4g1598 4 14920308 14921456 ECH
Lja4g1598 4 14920308 14921456 Lja6g2078 6 49263793 49265670 PCT