Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1596 ATGAAGGCAGCCACTAAGAATTTCAGTTCTAACACTGTGTTAGGAGAGGGAGGTTTTGGTACAGTGTACAAGGGTTATATTAAGGACAAAACAACTACAAACAGAGGTCATGGATTGACTATTGCTGTCAAGAAATTGAATCCTAAAAGTTCTCAAGGACTTAAAGAATGGCAGACAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCTACCTTGTGAAGTTGTTGGGTTTCGGGGGAGAGGACAGTGAGTTGTTCCTGGTGTATGAATTCTTGCACCGGGGTAGCTTGGATAACCACCTATTTGGAAGAAGTGCAAATGTTCGTCAACTTTCATGGGACACAAGGCTAAAAGTTATGCTTGAAGCAGCCAGAGGTCTTGCTTTTCTGCACTCCTTAGAGAAGAATATTATACACAGAGACCTCAAGACTTCAAATATATTACTTGATAAGGATTCTTTTGACGGAGAATCGGAGATGCTAACTAGTGAGCGGATACGTGACATATTGCACCTTTGTCAGCATAAGTCCTTATTGGATTGGCTCAAACCAAATCTACTAAATAGAAGGAAAATGAGAATCACTATGGATGCAACGTTGAGAGGTAAGTATCCACCCAACATAGCTTCACAAGTAGCCCAATTAACTCTCAAGTGCATCCAAACAGACCCCAAAATCAGACCATCAATGAAAGAAGTTGTTGAAACATTGGAAAAAATTGAAGGAGGCAATGAGAAACCAGCTGATAACAGAAACCATGCCACTCATTCTCAGGCTAAAGCTGCTTGTTCTAGTGCACTAGTTGATTACAGTACCACGGAACATGTTTAG 831 0.4091 MKAATKNFSSNTVLGEGGFGTVYKGYIKDKTTTNRGHGLTIAVKKLNPKSSQGLKEWQTEVNFLGRLSHPYLVKLLGFGGEDSELFLVYEFLHRGSLDNHLFGRSANVRQLSWDTRLKVMLEAARGLAFLHSLEKNIIHRDLKTSNILLDKDSFDGESEMLTSERIRDILHLCQHKSLLDWLKPNLLNRRKMRITMDATLRGKYPPNIASQVAQLTLKCIQTDPKIRPSMKEVVETLEKIEGGNEKPADNRNHATHSQAKAACSSALVDYSTTEHV* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1596 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Lja4g1596 276 ProSitePatterns Protein kinases ATP-binding region signature. 14 45 IPR017441 GO:0005524
Lja4g1596 276 PANTHER OS01G0588500 PROTEIN-RELATED 159 259 - -
Lja4g1596 276 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 1 153 - -
Lja4g1596 276 SUPERFAMILY Protein kinase-like (PK-like) 3 236 IPR011009 -
Lja4g1596 276 ProSiteProfiles Protein kinase domain profile. 8 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1596 276 PANTHER OS01G0588500 PROTEIN-RELATED 1 153 - -
Lja4g1596 276 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 159 259 - -
Lja4g1596 276 SMART serkin_6 8 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1596 276 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lja4g1596 276 Gene3D Transferase(Phosphotransferase) domain 1 92 160 - -
Lja4g1596 276 Pfam Protein tyrosine and serine/threonine kinase 11 153 IPR001245 GO:0004672|GO:0006468
Lja4g1596 276 Gene3D Transferase(Phosphotransferase) domain 1 161 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1596 Lja-Chr4 14896363 14898845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1596 1 241 Receptor kinase-like Gene Family AT4G02010 32.542 1.93e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g1596 PK_Tyr_Ser-Thr 5.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1596 - - mnt:21389994 271.166