Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1595 ATGGGGAACTGTTGGAGTCTTCAGTCAGGTTCTCCAAGTGGTATTCCCAATTCCAATAATGCCCATGACCCCAACAATCAATCAGGGAGCATTCAGTTTTCTTCTGGTTTCAGCAACGCGAAATTGATACAGAATGGCAATTCGACTTCTCTTGGACGTAGCAGCCACTCTGGAGGAACAAGCAGACTCTTTAGTAATAAGTTCTCAACAGGGAACAATACAAGTTCATCCCTTTGGAGCTCTGATAATAGCCAAGCCTCTAGATTAAGAGATGAAGAAGAGTTTCCTAATGGACAGATCTTGGATGCTGCAAACTTGAGAGTTTTTACTTTTGCAGAACTGAGAGCAGCCACTAAAAATTTCAGAACTGACAGTGTGTTGGGAGAGGGAGGGTTTGGTACAGTATTCCAGGGTTTGATTAAGGACACAGCAGCATCTGCAAGAGGTAAGGAGTTGACTATTGCCATCAAGAAATTGAATTCTGAAAGCAAGCAAGGAATTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAACCTTGTAAAGCTTTTGGGATTCGGGCGAGAGGATAGTGAGCTATTTCTTGTGTATGAATTTATGCACCGGGGAAGCTTGGATAACCACTTATTTGGAAGAGGTTCAACTGTTAGGCCACTTTCATGGGACACAAGGCTAAAGGTTATGATTGGAGCAGCTAGGGGACTGAATTTCCTTCACTCCTTGGAAAAGAAAATTATATACAGAGACTTCAAGCCGTCAAATATATTACTTGACAAGGCATATACAGCCAAGTTATCAGACTTTGGCTTAGCCAAGACTGGGCCTTCTTATGATCACTCTCACGTATCAACACAGGTTGTTGGAACACATGGCTATGCTGCTCCTGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTGTATGGATTTGGGATTGTTTTGATGGAGATGCTAACCGGGAAGCGGATAGGTGATATAAAGCACCTTTGTGAGAAAAAGTCCCTACAGGATTGGCTTAAATTAAATCTACTGAATAGAGGGAAAATGAGAATGAACATGGATGTAAAGTTGGAAGGGAAATATCCACCCAACTTAGCTTCAAAAGTAGCTCAACTCACTCTCAAATGCATCCAGGTAGAACCCAAAGTTAGGCCATCAATGAAAGAAGTTGTTGAAACACTGGAACAGATTGAAGCAGCTAATGAAAAACCAGCTGATAACAGAAAAAAGACTAATCATTCCAGGGCAGTTCAACTACATGGCCAGCCAGATGGTGGCTAA 1302 0.4217 MGNCWSLQSGSPSGIPNSNNAHDPNNQSGSIQFSSGFSNAKLIQNGNSTSLGRSSHSGGTSRLFSNKFSTGNNTSSSLWSSDNSQASRLRDEEEFPNGQILDAANLRVFTFAELRAATKNFRTDSVLGEGGFGTVFQGLIKDTAASARGKELTIAIKKLNSESKQGIAEWQSEVNFLGRLSHPNLVKLLGFGREDSELFLVYEFMHRGSLDNHLFGRGSTVRPLSWDTRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDKAYTAKLSDFGLAKTGPSYDHSHVSTQVVGTHGYAAPEYIATGHLYVKSDVYGFGIVLMEMLTGKRIGDIKHLCEKKSLQDWLKLNLLNRGKMRMNMDVKLEGKYPPNLASKVAQLTLKCIQVEPKVRPSMKEVVETLEQIEAANEKPADNRKKTNHSRAVQLHGQPDGG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1595 433 Gene3D Phosphorylase Kinase; domain 1 105 204 - -
Lja4g1595 433 CDD STKc_IRAK 127 404 - -
Lja4g1595 433 MobiDBLite consensus disorder prediction 407 433 - -
Lja4g1595 433 PANTHER OS01G0588500 PROTEIN-RELATED 12 433 - -
Lja4g1595 433 ProSiteProfiles Protein kinase domain profile. 121 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1595 433 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 433 - -
Lja4g1595 433 Gene3D Transferase(Phosphotransferase) domain 1 205 428 - -
Lja4g1595 433 MobiDBLite consensus disorder prediction 44 85 - -
Lja4g1595 433 MobiDBLite consensus disorder prediction 44 93 - -
Lja4g1595 433 MobiDBLite consensus disorder prediction 1 31 - -
Lja4g1595 433 ProSitePatterns Protein kinases ATP-binding region signature. 127 158 IPR017441 GO:0005524
Lja4g1595 433 Pfam Protein kinase domain 122 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1595 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Lja4g1595 433 SUPERFAMILY Protein kinase-like (PK-like) 102 401 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1595 Lja-Chr4 14884061 14886749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1595 98 409 Receptor kinase-like Gene Family AT4G02010 43.175 1.44e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g1595 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1595 - - gmx:100813304 661.373