Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1590 ATGGAAGATGATGAAGAATGCAGCACAGGGCTATGTCTCGGGTTGGGAATGGGAGGTTACATGCCAAAAAAGGAGAACCAGAAAGTGAACAAGGTAGAGAGGTTCATGTATTTGGAGAAAATCCCTGAGAGACTACAACATTACCCGACAAAAAGCACTGATTCCGATCACAACACCGATAACAAGAACACCTGCAGAAAGAAACTGAGGCTTACAACTGAACAATCAGCCATGCTTGAAAACTGCTTCAAGCTGCATACCACTCTTAATCCAGTCCAGAAACAAGCACTTGCTGATAAATTGAATTTGAAGACTAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGCTGAAGAAGACAGAGGTGGATCACGAGTTGTTGAAGAAACAGTGCCAGAATCTAAGCGATGAGAATCGAAGGTTGAAGAAGGAATTGCAGGAACTTCGTGCATTGAAAGTTGGAGAATCATCAGCATTATGCATTCAGCTATCGAAAAGAGCAACTCTAGCAATGTGTTCTTCGTGCCAGAAACTATTGAAGCTCAATGAAGGGAACAACAACTTTTCCAATAACCTCAAATCAGAGAGCGACATAGACATAGAGTAA 618 0.4159 MEDDEECSTGLCLGLGMGGYMPKKENQKVNKVERFMYLEKIPERLQHYPTKSTDSDHNTDNKNTCRKKLRLTTEQSAMLENCFKLHTTLNPVQKQALADKLNLKTRQIEVWFQNRRARTKLKKTEVDHELLKKQCQNLSDENRRLKKELQELRALKVGESSALCIQLSKRATLAMCSSCQKLLKLNEGNNNFSNNLKSESDIDIE* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1590 205 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Lja4g1590 205 SMART HOX_1 64 126 IPR001356 GO:0003677
Lja4g1590 205 PANTHER - 50 191 - -
Lja4g1590 205 Gene3D - 58 128 - -
Lja4g1590 205 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 50 191 - -
Lja4g1590 205 Coils Coil 114 155 - -
Lja4g1590 205 CDD homeodomain 66 123 IPR001356 GO:0003677
Lja4g1590 205 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Lja4g1590 205 SUPERFAMILY Homeodomain-like 49 123 IPR009057 -
Lja4g1590 205 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
Lja4g1590 205 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1590 Lja-Chr4 14853347 14854705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1590 56 182 Homeobox Transcription Factor Family AT4G37790 62.205 2.64e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja4g1590 Homeodomain 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1590 K09338 - gmx:100812222 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1590 4 14853347 14854705 Lja6g2072 6 49228717 49230393 PCT