Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1587 ATGCATCGCAGAATACTCCAAGAGAAATCTCCTTCATCCTCCTCTTCACCCCACAACTCTGGAGCATTGTTCTTTTTCCTTGGAGGGACTGTAGTGCTGATCATATTGCTGATTCTTCTATTTGTATTTTGGAGGCGAATTAAACGGCCAGCAGAGAGGACTACTCCAACTAATGAGCAGCATGAGAGGATCACGATGGCAGCCTCAACTACTAAAGCTCAACAGACAGGATTCATGGAATTCGTTAGTGGGAACCTTCGTACAATCAGCTACTTCGATTTCCAGACATTAAGGAAGGCCACCAAGAATTTCCATCGTACAAATCTTCTTGGAAGTGGTGGATTTGGACCTGTTTATCAGGGAAAGTTGGCAGATGGGAGGCTGATTGCTGTTAAGCAATTGTCTCTTGACAAGTCCCAACAAGGAGATAAAGAATTTCTAGCAGAAGTGAGGATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTATGGGGTGTTGCACTGATGGACCTCAAAGGATTCTTGTGTATGAATACATGAAGAACAGAAGTTTGGACCCCTTTGTATATGGAAACAGTGATCAATTTCTAAACTGGAGCACTAGATTCCAAATAATCCTTGGAGTCGCGCGGGGATTGCAATACCTCCATGAGGATTCACATATAAGAATTGTTCACCGAGATATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCGGCCGAGGATTGGAGATTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACACAATTTGCTGGAACATTAGGTTATACAGCTCCTGAATATGCTATTAGAGGAGAACTTTCAGAAAAGGCAGACATCTATAGTTTTGGAGTTCTGGTGCTTGAAATCATCTGTTGCAGAAAAAATACAGATCTCACTTTACCATCACAAATGCAGTACCTCCCTGAATATGGTTGGAAACTTTATGAGAAGTCAATGGTGATGGATCTTGTGGATCCTAAGCTGCGCGAAGATGGATTCGTGGAAAAGGATGTGATGCAAGCATTCCATGTGGCCTTCTTGTGCCTTCAGCCTCTTCCAGATATGAGACCAGCCATGTCAGAGATTGTAGCATTGTTGACATTCAAAATTGACATGGTAACAACACCAATGAGGCCAGCTTTCCTTGACCGAAGGCGTAAAATGGATGAAGAACACCACTCTTGGGAAGCCATATCCAAGTCTTTCAAATCTCCAGGGGCCAGTGATTATTCTCCCTGA 1266 0.4313 MHRRILQEKSPSSSSSPHNSGALFFFLGGTVVLIILLILLFVFWRRIKRPAERTTPTNEQHERITMAASTTKAQQTGFMEFVSGNLRTISYFDFQTLRKATKNFHRTNLLGSGGFGPVYQGKLADGRLIAVKQLSLDKSQQGDKEFLAEVRMITSIQHKNLVRLMGCCTDGPQRILVYEYMKNRSLDPFVYGNSDQFLNWSTRFQIILGVARGLQYLHEDSHIRIVHRDIKASNILLDEKFRPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIICCRKNTDLTLPSQMQYLPEYGWKLYEKSMVMDLVDPKLREDGFVEKDVMQAFHVAFLCLQPLPDMRPAMSEIVALLTFKIDMVTTPMRPAFLDRRRKMDEEHHSWEAISKSFKSPGASDYSP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1587 421 SMART serkin_6 104 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1587 421 Gene3D Phosphorylase Kinase; domain 1 62 180 - -
Lja4g1587 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Lja4g1587 421 ProSiteProfiles Protein kinase domain profile. 104 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1587 421 PANTHER RECEPTOR-LIKE KINASE 80 391 - -
Lja4g1587 421 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 391 - -
Lja4g1587 421 CDD STKc_IRAK 110 376 - -
Lja4g1587 421 Gene3D Transferase(Phosphotransferase) domain 1 181 384 - -
Lja4g1587 421 Pfam Protein tyrosine and serine/threonine kinase 107 374 IPR001245 GO:0004672|GO:0006468
Lja4g1587 421 SUPERFAMILY Protein kinase-like (PK-like) 90 399 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1587 Lja-Chr4 14830337 14833374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1587 92 415 Receptor kinase-like Gene Family AT1G56120 45.317 1.67e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g1587 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1587 - - gmx:100812302 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1587 4 14830337 14833374 Lja4g1587 4 14830337 14833374 ECH
Lja4g1587 4 14830337 14833374 Lja6g2070 6 49180799 49184751 PCT