Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1581 ATGATACCAGCTCACCGCCCTTCAGTGTCACCCTCTCTCATGCCTCTTGATCTTAATCAAGATGATCAAAACCATGATGAGCTTTTCAGCCCAAACCATCTTGTAGCCTCTTCTTCATTTTCTTCTATTTCATATCCTATCCTCTTCAACCCACCTGATCAAGATCAAGAAGGATCATACTGCTGGGAACCCAAGCACTCACCAAATGAGGAAGAGGACGAGAAGATTATTATTCCTTCTAGCGGATCATGGGATAATTCAGCTGCAGAGAAGCATGGCAGCAGCAGCAAACATAAGCTGAGAGTTTGGAAAAGAGAAGAAAGGGATGGTGAAAATCTTGAAGAAGCTCATGAGGATGGTTCTTTATCAGTGAAGTGGATGTCTTCAAAGATGAGAATTATGAGGAAGATGATTGTTCCTGATCAAAGGGGAACTTCTTATGCTGTAGCTGAAAACACTATGCAGAGATTTGAAGATCAAAAGCTACCATTGTCACCTGTTGGAACTGACAATAGCAGCAACAATTATTCAAACCAAAGTTTTAACACTGTTAGGGTTTGTGCTGATTGCAACACCACTAAGACACCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAACGCATGTGGGATCAGACAAAGGAAGGCAAGACGTGCCATGGCGGCGGCTGCTGCAGCTGCATCGGGAGACGGTACGATTCTCGTGACAGCTGAGTCATCTGTGAAGAACAGAAACAAGTTGGTGAAGAAGAAAGACAAGACCAAAGTTGAGTCTGCACCACCGGTAGCCCAGATAAAAAAGAAGCACAGAGCTAATAAGCCATCTCAAAGTAAAAAGAAGTTCGGTTTTGAGGATTTGACATTAAGCTTGAGCAAGAACTTGGCTTCTCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCAGCGATATTGCTCATGGCTTTGTCTTATGGCTTAGTTCATGGATGA 978 0.4397 MIPAHRPSVSPSLMPLDLNQDDQNHDELFSPNHLVASSSFSSISYPILFNPPDQDQEGSYCWEPKHSPNEEEDEKIIIPSSGSWDNSAAEKHGSSSKHKLRVWKREERDGENLEEAHEDGSLSVKWMSSKMRIMRKMIVPDQRGTSYAVAENTMQRFEDQKLPLSPVGTDNSSNNYSNQSFNTVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAASGDGTILVTAESSVKNRNKLVKKKDKTKVESAPPVAQIKKKHRANKPSQSKKKFGFEDLTLSLSKNLASLQQVFPQDEKEAAILLMALSYGLVHG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1581 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 221 - -
Lja4g1581 325 Gene3D - 178 262 IPR013088 GO:0006355|GO:0008270
Lja4g1581 325 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 325 - -
Lja4g1581 325 ProSiteProfiles GATA-type zinc finger domain profile. 181 217 IPR000679 GO:0006355|GO:0043565
Lja4g1581 325 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Lja4g1581 325 MobiDBLite consensus disorder prediction 52 118 - -
Lja4g1581 325 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 325 - -
Lja4g1581 325 MobiDBLite consensus disorder prediction 64 78 - -
Lja4g1581 325 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g1581 325 Pfam GATA zinc finger 187 220 IPR000679 GO:0006355|GO:0043565
Lja4g1581 325 MobiDBLite consensus disorder prediction 91 118 - -
Lja4g1581 325 SMART GATA_3 181 232 IPR000679 GO:0006355|GO:0043565
Lja4g1581 325 CDD ZnF_GATA 186 218 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1581 Lja-Chr4 14799681 14802060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1581 120 325 C2C2-Gata Transcription Factor Family AT4G26150 41.629 7.50e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja4g1581 GATA 6.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1581 - - gmx:100810698 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1581 4 14799681 14802060 Lja4g1581 4 14799681 14802060 ECH
Lja4g1581 4 14799681 14802060 Lja6g2067 6 49164322 49166620 PCT