Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1574 ATGGCCCCTCGAATCCTCCTATGCGGCGACGTTTTGGGCCGCCTGAACCAGCTCTTCAAGCGCGTCTCATCGGTGAACAAATCGGCGGGTCCATTCGACGCGCTCTTGTGCGTGGGTCAATTCTTCCCGGACTCACCTGACCTGATGGAAGACTTCATGGCCTACATCGAAGGTGGCTCCAGCATTCCCCTCCCGACTTACTTCATCGGCGACTACGGCGTCGCAGCCCCGAAAATTCTCTTGGCAGCTTCCAAGGACTCTGCTAACCGTGGTTTCATGATGGAGGGCTTGAAGGTTTGTGAGAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCACACTCAATGGGTTATCTGTGGCTTATTTATCTGGTAGGAAATCATCAAATGTTCAACAGTTTGGAACTTATAGTCAAGATGATGTTGATGCTTTGCGCGCAATAGCTGAGGAACCTGGAATTGTTGATTTGTTCTTGACTAACGAATGGCCTAGCGGGGTTACTAATCGAGCAGCTGCTTCAGACATTCCTGCTGGACTCTCAGATTCTATAGGCAGTGATCCGACCATATCAGAGTTAGTAGAAGAGATTAAACCACGCTATCACATTGTAGGTACTAAAGGTATATACTATGTCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTGGCATGCGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCAACTGAGCTTGCCATGAAAACCACAACTACCACCTTATCACCATACACATCTGTGGGGAACAAAACTTCTCCAAAGGATACCACAAAGAGATCCAGTGATGGTATCTCTGATTCTCAATATTGGAGATATGATGATGTTTCTCAAAAGCGATTAAAACATGGAGCTGGGGATGGTGATAAGCTGTGTTTCAAATTTGTATCATCTGGCTCTTGTCCACAAGGAGAGAAGTGCAATTTTCGACATGATATAGATGCAAGGGAACACGGCATGAGAGGCGTTTGTTTTGATTTTTTGAATAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGTGATATGCATCCTTCCACGAGACCTGGGTCCCGAAGTATTAGGTCTAGCAGATCTCAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTAATAATAAGCATTGGGGAAAATTACTATTTGGCATTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAGTACCCCGTCCATGTCTTCAGAATCTGAAGTTGAGCTCTTTCGGTTTCAAAACAGTCTCAAGAGGTACTACAAGGACCAGGAAAAGGAGGTCATCTTTTTTGAGTGGCTTTCTGTACGAGGAACTCATGCCAATCTTCAGGCCATTCCCATTCAATCTTCCAAAGCAGTTATGGTTGAAAAAGCATTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCAAAGAAATTTGATAGCATATCTGATGGAAGGAAGTTTCTTAAGGAACAAATTGATGGGAAATCAAGCTTGTTTTATGCTGAAATACCAGGAGGCACAATTTTGCTCCATCATGTTGAGGAGAAAGAAAGATTTTCTGCCCAATTTGGACGAGAGGTTCTGGCAGGGTTGCTTAATATGGCAGATAATGCAGATTGGAGGACTCGCAAATATAGCAAAGATGAAGAGATGAAATTAGTCGAAGATTTCAAGAGTCAATTTCAAGAATATGATCCAAACTGTTGA 1824 0.4337 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPDLMEDFMAYIEGGSSIPLPTYFIGDYGVAAPKILLAASKDSANRGFMMEGLKVCENLYWLKGSGKFTLNGLSVAYLSGRKSSNVQQFGTYSQDDVDALRAIAEEPGIVDLFLTNEWPSGVTNRAAASDIPAGLSDSIGSDPTISELVEEIKPRYHIVGTKGIYYVREPYSNVDAVHVTRFIGLACVGNKDKQKFIHAISPTPASTMSSTELAMKTTTTTLSPYTSVGNKTSPKDTTKRSSDGISDSQYWRYDDVSQKRLKHGAGDGDKLCFKFVSSGSCPQGEKCNFRHDIDAREHGMRGVCFDFLNKGKCERGPDCNFKHSLQDEGDMHPSTRPGSRSIRSSRSQECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTPSMSSESEVELFRFQNSLKRYYKDQEKEVIFFEWLSVRGTHANLQAIPIQSSKAVMVEKAFNLAAQKLGFEFVAKKFDSISDGRKFLKEQIDGKSSLFYAEIPGGTILLHHVEEKERFSAQFGREVLAGLLNMADNADWRTRKYSKDEEMKLVEDFKSQFQEYDPNC* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1574 607 ProSiteProfiles Zinc finger C3H1-type profile. 347 370 IPR000571 GO:0046872
Lja4g1574 607 SUPERFAMILY HIT-like 392 465 IPR036265 -
Lja4g1574 607 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 606 IPR040194 -
Lja4g1574 607 SMART c3hfinal6 312 337 IPR000571 GO:0046872
Lja4g1574 607 SMART c3hfinal6 344 369 IPR000571 GO:0046872
Lja4g1574 607 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Lja4g1574 607 SUPERFAMILY CCCH zinc finger 314 339 IPR036855 GO:0046872
Lja4g1574 607 CDD MPP_CWF19_N 6 230 - -
Lja4g1574 607 PANTHER CWF19-LIKE PROTEIN 1 1 606 - -
Lja4g1574 607 Gene3D - 387 488 IPR036265 -
Lja4g1574 607 Pfam Protein similar to CwfJ C-terminus 1 386 501 IPR006768 -
Lja4g1574 607 Pfam Protein similar to CwfJ C-terminus 2 515 604 IPR006767 -
Lja4g1574 607 Gene3D - 300 372 - -
Lja4g1574 607 MobiDBLite consensus disorder prediction 266 288 - -
Lja4g1574 607 SUPERFAMILY CCCH zinc finger 347 371 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g1574 CwfJ_C_1 2.7e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1574 K24939 - gmx:100782106 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1574 4 14740648 14746155 Lja4g1574 4 14740648 14746155 ECH