Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1566 ATGGATGGTGTCTTTTCCCTTCCTGAACCAGCAAGAATTGATTTCCTTCGCTCTCTGGTCCGGTCTTTTCACTGCACTTACATTTGTTTGTGGCGATATCAACATTCCAATTTATCCAATCGTTTGTTCTTTTTGGATGGTTTTTACAATGTAACAAGTGACCAACCAAGCTCTTCTTTGGGTAGTTGTAGTGTAGCTGAAAGGGGTTTTAACCAATATCAGCGTTTAACTTTTGATGTCAATAATGACTGTGTTCCTGGACTAGCTTTTAAGTACCGACTTCCCTACCTTGAGCTGCAACAATTGGACCTTCTAAGACTCACATCCACAGATATGCAGACACAATTCTATCAAGCTGACATTCGGACAGCACTTGGGAATTTATTTCCAGAAGTTCTCTGTCTACAATCCCAATCAATTGATCAGAATCCACTTTCATCATCTTCATCTTCTTTAATACCTTTATCTACGTCAGGTAGCCATGAATATCCATCCATGTTGTTCAGAAATGAAACCCTTTCTATGGTTTCCAAAGTGCCACTCACACAAACTAGCCCATACCAACAAACCATTCAAGCATCAACTCAAACAGTTCCTAGTCAAACAATCTCAACACCAGAGGGTGAACATGATGCAATAGTAAGAGCATTCCTCCATGTTATGTCCCCACCTTCCTCTTCTTCAACTTCTCATAATCAGCAAAATTCTCCTTGTACTTCATTGGTACATCCAGAAGCTACTGCGGCTTTCAAGAGATATAATAGACCAGATACAATAGTTCCAAATAGAACATCCCAAACAGGTTCCAACTTTCGGGGGCAGAGCCTGCTGAATAGATCATTTGCATTCTGTAGAAGCTTAAATTTAATGAGAATGAGAGAACGCGTGCAAGCAGCACGTTCCACTAGAACCCATTTGGATCATGTGATATCAGAGCGAAGAAGGCGTGAAAATCTCAATAAGAATTTCCAGGCACTTAGAGCACTCCTTCCTCCAGGAACTAAGAGAGACAAAGCATCGATCATTACAGCAGCAAAGGAGACAATGAGGGCCTTGTTAGCTGATATTGTGAAGCTTAACTTAAGAAATCAGAAGTTGATGAAACTTTTATCCGCAAAGGAAAGATTGCATGTTCAGGTTTCAGATGTGACAGAAGCGAGCTCATCACAAGAGGGACGAATGATAGACTTGCAAGTGACTTTGAGAGGAGATAGTTCTCAAGTTGATTTATTAATTCGATTATTGGAATTCTTAAAGCTAGTTCAGAATGTGACCTTAATTTCCATGGATACAAATACATATATTATACAAGGGACAACCATAAATCGATTAACCTTCAGGCTAAGGAGTATTCAGGGAAGTGAATGGGATGAATCTGCCTTCATGGATGCAGTCAGAAGAGTGGTAGCTGACTTCATAGCGATGGTATAG 1431 0.4018 MDGVFSLPEPARIDFLRSLVRSFHCTYICLWRYQHSNLSNRLFFLDGFYNVTSDQPSSSLGSCSVAERGFNQYQRLTFDVNNDCVPGLAFKYRLPYLELQQLDLLRLTSTDMQTQFYQADIRTALGNLFPEVLCLQSQSIDQNPLSSSSSSLIPLSTSGSHEYPSMLFRNETLSMVSKVPLTQTSPYQQTIQASTQTVPSQTISTPEGEHDAIVRAFLHVMSPPSSSSTSHNQQNSPCTSLVHPEATAAFKRYNRPDTIVPNRTSQTGSNFRGQSLLNRSFAFCRSLNLMRMRERVQAARSTRTHLDHVISERRRRENLNKNFQALRALLPPGTKRDKASIITAAKETMRALLADIVKLNLRNQKLMKLLSAKERLHVQVSDVTEASSSQEGRMIDLQVTLRGDSSQVDLLIRLLEFLKLVQNVTLISMDTNTYIIQGTTINRLTFRLRSIQGSEWDESAFMDAVRRVVADFIAMV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1566 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Lja4g1566 476 SMART finulus 309 358 IPR011598 GO:0046983
Lja4g1566 476 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 472 IPR044658 -
Lja4g1566 476 CDD bHLH_AtbHLH_like 308 359 IPR045239 -
Lja4g1566 476 Gene3D - 300 378 IPR036638 GO:0046983
Lja4g1566 476 Pfam Helix-loop-helix DNA-binding domain 308 352 IPR011598 GO:0046983
Lja4g1566 476 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 472 - -
Lja4g1566 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 368 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1566 Lja-Chr4 14628564 14631947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1566 1 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 33.766 8.76e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g1566 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1566 - - gmx:102667064 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1566 4 14628564 14631947 Lja4g1566 4 14628564 14631947 ECH
Lja4g1566 4 14628564 14631947 Lja6g2054 6 48980096 48983954 PCT