Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1563 ATGGAAGCAGAAGGAGCAGCGAGAGTCAAAGCAGAGTTACTGGACGACACCAGTTCCGGCCTCTCCGACGACGGTTTCAGCGAAATCAAAGAGCTAGACGCCGTTCACATCAAACAAGAGCTTCCTGACGCCGCCGCCGCCTTGCCGAAACCAATGGAAGGGTTGCACGAGGTGGGCCCACCGCCCTTCCTCAAGAAAACATACGAAATGGTGGATGACCCGGACTCCGACCCGATTGTGTCATGGAGCCCCGCCCGTGACAGCTTCATCGTCTGGGACTCTCACGAATTCTCCAAAATCATTCTCCCTAAATACTTCAAACACAGCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGGTTCCAGGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAGCTGCACCAGCAGGGGACAGGGTTCAATTTGATGAAGCCTGGGTTGGAGGATGAGGTGGAGAAGCTGAGGAAGGACCAGAATATATTGAAAGTGGAGATTCTGAAGCTCAGGCAGCAGCAGGAGAATTCACACGTTCAGCTCACCAATGTTCAGGAGCGGATTCGGCGCACGGAGTTGAAGCAGTGCCAGATGATTTTCTTCCTCACAAGATTGGCAAGAAGGCCAATGTTTGTTGAGCAGTTGATCCAAAGGGTCAAGCGGAAAAGAGACATTGAAGGCACTGACATGGGTAAGAGACCAAGATTGCTTGGAACTCAGTGCCCTGTTACAATTCCTAATGTTGATTATAGACACCAAGGTTGTGATCAATTTGCTACACTACAATCTGAGCTGAATGGGCTCTTGTCTGAAAATGTTGATGCTAGCAGGATGCAGCCACCAGGTCCCTCTTCCCTTGATGATGAATTGTGCAGCTCAGTGCAGGGTTTAAGGGCATGTGGTTCTAGAGCACAGGATGTGTCTTCTGCTTATCATGTGATGTCAGAAAAACTGTTGGGGGAGAATTCTATTGTTGAAGAGGAACTTGATGTGAATGACTCCAATATTTATCTTGAGTTGGAGGATTTGATAAGCAAGCCAGCAGATTGGGTTGGATCAGCAAGTGGGTTGGTGGGGCAAACTAGTTGA 1158 0.487 MEAEGAARVKAELLDDTSSGLSDDGFSEIKELDAVHIKQELPDAAAALPKPMEGLHEVGPPPFLKKTYEMVDDPDSDPIVSWSPARDSFIVWDSHEFSKIILPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQQGTGFNLMKPGLEDEVEKLRKDQNILKVEILKLRQQQENSHVQLTNVQERIRRTELKQCQMIFFLTRLARRPMFVEQLIQRVKRKRDIEGTDMGKRPRLLGTQCPVTIPNVDYRHQGCDQFATLQSELNGLLSENVDASRMQPPGPSSLDDELCSSVQGLRACGSRAQDVSSAYHVMSEKLLGENSIVEEELDVNDSNIYLELEDLISKPADWVGSASGLVGQTS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1563 385 SUPERFAMILY "Winged helix" DNA-binding domain 59 152 IPR036390 -
Lja4g1563 385 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 43 370 IPR027725 -
Lja4g1563 385 Gene3D - 56 153 IPR036388 -
Lja4g1563 385 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 43 370 - -
Lja4g1563 385 Coils Coil 176 196 - -
Lja4g1563 385 Pfam HSF-type DNA-binding 63 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g1563 385 MobiDBLite consensus disorder prediction 1 21 - -
Lja4g1563 385 ProSitePatterns HSF-type DNA-binding domain signature. 102 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g1563 385 PRINTS Heat shock factor (HSF) domain signature 63 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g1563 385 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g1563 385 PRINTS Heat shock factor (HSF) domain signature 114 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g1563 385 SMART hsfneu3 59 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1563 Lja-Chr4 14605098 14607118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1563 49 373 HSF AT2G26150 42.424 4.88e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja4g1563 HSF_DNA-bind 5.2e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1563 4 14605098 14607118 Lja4g1563 4 14605098 14607118 ECH