Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1557 ATGTGCGGTGACGCCACCAACTGGGACGAAGATGCGTACAGAGAAAGCATCCTGAAGGAGCGTGAGATTCAAACGCAAACCGTTTTCCGAACCGCCTGGGCTCCTCCGCAAACCCCTAACCTCCACTCTCTCATCGCCGCATCCAGCGACGGTTCCATCGCCGCATACTCCATCTCCGCCTATAACCTCAACAATCCGATTGGTTCTGTCAAAAGTGATACAGATGAGTTATTTGCTGAACCGGATTGTATCTTTAAAGCGCATGATGGACCGGCGTATGATGTCAAATTCTATGGTGATGGTGAAGATGCTCTGTTGCTGAGTTGTGGTGATGATGGTCGGGTTCGAGGATGGAGATGGAATGGCCTTACAAGCTCAAATTGTTCTGGTTCTTCGCTAGGAAATGATATCAAGCCTGTACTTGATGTGGTAAATCCTCAGCAGAAAGGTCCTTGGGGTGCACTTTCACCTATCCCTGAGAATAATGCTATTGCTGTTAATACTCAGGGGGGATCTATTTTTGCTGCTTCTGGTGATTCCTGTGCATATTGTTGGGATGTGGAAACTGGTAAATTAAAAATGGTATTCAAGGGGCACTCAGACTACTTGCATTGTATAGTTGCTCGCAACACTTATAATCAGATTATAACAGGGTCAGAGGATGGGACCGCACGAATTTGGGATTGCAAAAGTGGGAAGTGTATCCAACTGATTAATCCAGCAAAACATTTGAAGTTAAAAGGATCTGTTTCATGCATTGGCTGTATTGCTTTGGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGGAATATATCACTTTGGAATCTTCCTGCATCAGAGTGTGTATCAAAGATTTCAACTCGTGCTTCTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTGCCGATCCTCTTCTCAATCGCTTTGACATGAATGGTGCGATCCTTTCACAAATACAGTGTGCTCCACCATCAGCTTTTTCTATCTCCTTAAACCCAGCTGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTGGATGTAATCTCACAATTTGGCAGCCACATGTGCACATTTCATTGTCGATGTATTTAG 1113 0.4474 MCGDATNWDEDAYRESILKEREIQTQTVFRTAWAPPQTPNLHSLIAASSDGSIAAYSISAYNLNNPIGSVKSDTDELFAEPDCIFKAHDGPAYDVKFYGDGEDALLLSCGDDGRVRGWRWNGLTSSNCSGSSLGNDIKPVLDVVNPQQKGPWGALSPIPENNAIAVNTQGGSIFAASGDSCAYCWDVETGKLKMVFKGHSDYLHCIVARNTYNQIITGSEDGTARIWDCKSGKCIQLINPAKHLKLKGSVSCIGCIALDASESWLACSSGRNISLWNLPASECVSKISTRASVQDMLFDNNQILTVGADPLLNRFDMNGAILSQIQCAPPSAFSISLNPAGVMAVGGYGCLVDVISQFGSHMCTFHCRCI* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1557 370 Gene3D - 8 144 IPR015943 GO:0005515
Lja4g1557 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Lja4g1557 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 367 IPR042626 -
Lja4g1557 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Lja4g1557 370 Pfam WD domain, G-beta repeat 246 277 IPR001680 GO:0005515
Lja4g1557 370 Pfam WD domain, G-beta repeat 191 228 IPR001680 GO:0005515
Lja4g1557 370 Gene3D - 159 368 IPR015943 GO:0005515
Lja4g1557 370 SMART WD40_4 78 119 IPR001680 GO:0005515
Lja4g1557 370 SMART WD40_4 280 316 IPR001680 GO:0005515
Lja4g1557 370 SMART WD40_4 151 186 IPR001680 GO:0005515
Lja4g1557 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Lja4g1557 370 SMART WD40_4 239 277 IPR001680 GO:0005515
Lja4g1557 370 SUPERFAMILY WD40 repeat-like 37 357 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1557 Lja-Chr4 14549595 14554629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1557 116 233 Eukaryotic Initiation Factors Gene Family AT2G46290 29.661 3.21e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1557 K13175 K03257 gmx:100806423 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1557 4 14549595 14554629 Lja4g1557 4 14549595 14554629 ECH