Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1555 ATGGCCACCCTGAGATCGGTTGCTGTCGCCGTCAGTGGCGGCTCCGGCGCCGCCAAGGGTAGCCGGCGAGCTGTTCAGTGGGCGGTGGACAATCTCGTGCCTCAAGCAGATAGGTTCATCTTAGTTCACGTCATCCCCAGAATCTCTTCAATTCCAACCCCAACTGGAGAGTATATTCCCGTTTCGGAAGCAGATGCCGATGCCTTTGCAACTTATGTGGAGGATGTGAAACAAAAGTCTGAACAAGTCTTTGTTCCATTCAAGAAGCTCTGCGAATCAGAGATGATGGAAACCATGCTGCTAGAAGACGATAATCCTGCAAATGCACTTCTTGGATTTGTCTCAGAGTCCGGGGTCCAAACTTTAGTGCTGGGTGACTCGTCAAATTTCATTACAAGGAAGCTAAAAGGACCTGGGATACCAAATACCATTCTAAGATGTGCTCCTGACAGCTGTGATGTATATGTTGTATCTAGAGACAGAATTATATCAAATTTAGCTGATTCTTCATCTTCAAATCCTCATGAGACTAGCACAAGCTACTTCATGTCTACTCAAGTAAATAAAGCAAACTATGGTGCTGGCTTTGGTGGAGAAATGTCTGGAATTAATTCATCCTCAATGGAACCCAAAATTCTAAAAAATTTCAGATTTTTATCATTATCAGACCGTAGTTACATTGGTCTGCAAACAAATAGTCGTAGGAGTTCTTTTGAGAATTCTATCCAAAATGAAGAAGAAATTCCAGAATACATCGGAGATGATGTTGAAACTATTAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACTGGAACAGTTAGGCATGCAAGAAGAAGCAGAACGGCTGCAGCTGGAGTTGCGGAATACCATTGCCATGTACAGACAGGTTTGTGAAGACCTAGCTCGTGCTCAAAGCAAGGCCTCTTTACTTTCTTCTGAGTCTCTTGAAGATTCTAAAAGAATAAATGCTTCCCTGAAAAGAGAGGAGAATTTGAGAAAGATTGCTGCTGAGGAGAAAACAAAGTATTTAGAAGTCAAGAAGGAACTTGAGGAGGCAAAAAATGTGCTTGCCAAAGAATCATATGAAAGACAGATGGCTGAGCTTAATGTCCTTAAAGAATCCATAGAAAAACAGAGAATTGTGGATACATTGCTCTCTAAGGACCGGAGATACCGAATGTACAGCATGGATGAATTCAAGACAGCGACAAACAACTTCTCAGAGGACTTGATGATTGGTGAAGGTGGGTACGGGAAAGTATACAAGTGCAATCTTGATCACACACCAGTGGCTGTAAAGGTTCTGCATCATGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTCAGTCAGCTACACCATCCAAATATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTATGAATACATGGAAAATGGAAGCCTTGAAGACTACATTCTCAGCAAAAATGCAAAACCACGACTTCCTTGGTTTATTCGATTTCGTATTGTTTTTGAAATGGCTTGTGGCCTTTCATTCTTGCACAACTCGAAGCCAGAGCCCGTTGTTCACAGAGATTTAAAACCTGGCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTTCAGACGTTGGTTTAGCTAAACTCCTTTTCGAAGTTGTGCCTGACAATATTACAGAGTACAGAGAGTCGGTGCTTGCTGGTACTATCCACTACATGGACCCGGAATATCAGAGAACCGGCACTGTTAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAGCTAATAACTGCTCGCCATGCACGTGGACTCATTTTGACTGTTGAAGATGCGATCACAAATGGCTCCTTCCGTGATATTTTAGATAAATCAGCTGGAGATTGGCCCCTGGATGAGACATTAGAATTAGCTCAAATTGGCCTTAAATGCACTGCACTTAGATGCAGAGATAGACCTGAACTTGACACTGAAGTTCTTCCACTTCTCAAAAGACTTTCTGATATGGCAAATGCTAGTGAAAAGATGGGAAGAAGTAGTACATGCACGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATTATGGATGAGCCGCATATTGCTGCAGATGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAAGCACAATGTATCACCAGTGACAAAGGTTAAACTCCAGCATTCTGAGTTAACTCCAAACCACACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGCAACCTCTCTTTATTAG 2295 0.4222 MATLRSVAVAVSGGSGAAKGSRRAVQWAVDNLVPQADRFILVHVIPRISSIPTPTGEYIPVSEADADAFATYVEDVKQKSEQVFVPFKKLCESEMMETMLLEDDNPANALLGFVSESGVQTLVLGDSSNFITRKLKGPGIPNTILRCAPDSCDVYVVSRDRIISNLADSSSSNPHETSTSYFMSTQVNKANYGAGFGGEMSGINSSSMEPKILKNFRFLSLSDRSYIGLQTNSRRSSFENSIQNEEEIPEYIGDDVETISLHSFDSIASAQLEQLGMQEEAERLQLELRNTIAMYRQVCEDLARAQSKASLLSSESLEDSKRINASLKREENLRKIAAEEKTKYLEVKKELEEAKNVLAKESYERQMAELNVLKESIEKQRIVDTLLSKDRRYRMYSMDEFKTATNNFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHHDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYMENGSLEDYILSKNAKPRLPWFIRFRIVFEMACGLSFLHNSKPEPVVHRDLKPGNILLDRNYVSKISDVGLAKLLFEVVPDNITEYRESVLAGTIHYMDPEYQRTGTVRPKSDVYAFGVITLQLITARHARGLILTVEDAITNGSFRDILDKSAGDWPLDETLELAQIGLKCTALRCRDRPELDTEVLPLLKRLSDMANASEKMGRSSTCTPSQYYCPILQEIMDEPHIAADGFTYEYRAIKAWLSKHNVSPVTKVKLQHSELTPNHTLRSAIQEWKSGATSLY* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1555 764 PANTHER OS02G0152300 PROTEIN 6 759 - -
Lja4g1555 764 CDD RING-Ubox_WDSUB1_like 695 735 - -
Lja4g1555 764 Gene3D Phosphorylase Kinase; domain 1 387 480 - -
Lja4g1555 764 SMART serkin_6 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1555 764 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Lja4g1555 764 SMART Ubox_2 694 756 IPR003613 GO:0004842|GO:0016567
Lja4g1555 764 CDD STK_N 6 159 - -
Lja4g1555 764 Coils Coil 334 380 - -
Lja4g1555 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Lja4g1555 764 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 6 759 - -
Lja4g1555 764 Pfam U-box domain 692 757 IPR003613 GO:0004842|GO:0016567
Lja4g1555 764 Pfam Protein tyrosine and serine/threonine kinase 413 664 IPR001245 GO:0004672|GO:0006468
Lja4g1555 764 Gene3D HUPs 5 160 IPR014729 -
Lja4g1555 764 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 160 - -
Lja4g1555 764 ProSiteProfiles U-box domain profile. 690 763 IPR003613 GO:0004842|GO:0016567
Lja4g1555 764 SUPERFAMILY RING/U-box 686 757 - -
Lja4g1555 764 Gene3D Transferase(Phosphotransferase) domain 1 481 691 - -
Lja4g1555 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 762 IPR013083 -
Lja4g1555 764 Coils Coil 267 287 - -
Lja4g1555 764 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Lja4g1555 764 ProSiteProfiles Protein kinase domain profile. 408 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1555 Lja-Chr4 14530920 14537497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1555 6 758 Plant U-box Gene Family AT5G57035 52.591 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja4g1555 PK_Tyr_Ser-Thr 3.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1555 - - gmx:100805896 1221.45