Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1554 ATGGATGATTTTTCGTGCAGCCTTCTCTGCGAAGAAAGCATGAGTTGCTTGGAAGATGACTTGGAGGATGAAGAACCACAACACCCTTTCATTGATGATCCAGAGGATGAGTACATGGGTGTTTTGATTGAAAAAGAGATCGGTCAGTCGGTCAAGTGTTTCAAAAATGATGAAACTTTGGTGATTGAGGACTGGTTGAAGCTTGCTCGCATTGATGCAATCGATTGGATTCTCAAAACAAGAGCAGCATTTGGTTTTCGCGTTGAAACGGCTTACTTATCTGTCACATACTTCGATCGAATTCTTTCTGGGCAACCATGTTGGGCAATTCGATTGCTATCAATTGCATGTCTTTCTTTGGCTGCAAAGATGGAGGAGAGCAATGTGCCGGCACTATCAAAGTATTCCTCTGAGAAAAAATTGTGTGTTTGTATTTATGTTCAAGTCGGTCAAAAGTATATTCACTCGAATGACATAGAAGATTACATGAATTGGTTAAAAACACATTCAAACTGCATTGGAATGTGCAGTAATAAAAATGCAAACACACTGGAAATGATTCGAAAAATGGAGCTTTTGGTGTTGACCACATTGGAGTGGAATATGGGCATTGTCATTCCCTTTTCCTTTCTTTCTTATTTCATCACAAAGCTATGCCCAGAATCCCCTTCAAGTCCTGTTTTTTCCAAGGCCAAGCAACTCATCTTGGCCACAATGAAAGAGGTCAATTTAATGGATCACAAACCGTCTGTTATTGCAGCAGCTGCTACTTTGGTGGCATTGGATCAACAATTGACCTTAAAAACCGTGAAGTTGAAGCTGAGTTTAATTCCTCAACATGTGCTTCTTGAACCTAATGATGTATTTGGGTGCTACATTCTAATTCAAAGATTATATACTAGAGGAGGGAAGCTTTTACATACTCCATATTTTGAAACGAGGCCAAAAGATATGATAGAAAATTCTAATCAACATACTTCGACTAAGAGAATAAGACTCGCATTCTATGATGAAGAAAGTCATGGCAAGGGACTTCACTTGGAAAGTCCAAAATTTTGA 1059 0.39 MDDFSCSLLCEESMSCLEDDLEDEEPQHPFIDDPEDEYMGVLIEKEIGQSVKCFKNDETLVIEDWLKLARIDAIDWILKTRAAFGFRVETAYLSVTYFDRILSGQPCWAIRLLSIACLSLAAKMEESNVPALSKYSSEKKLCVCIYVQVGQKYIHSNDIEDYMNWLKTHSNCIGMCSNKNANTLEMIRKMELLVLTTLEWNMGIVIPFSFLSYFITKLCPESPSSPVFSKAKQLILATMKEVNLMDHKPSVIAAAATLVALDQQLTLKTVKLKLSLIPQHVLLEPNDVFGCYILIQRLYTRGGKLLHTPYFETRPKDMIENSNQHTSTKRIRLAFYDEESHGKGLHLESPKF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1554 352 SMART Cyclin_C_2 205 322 IPR004367 -
Lja4g1554 352 ProSitePatterns Cyclins signature. 70 101 IPR006671 -
Lja4g1554 352 SMART cyclin_7 75 196 IPR013763 -
Lja4g1554 352 SMART cyclin_7 209 297 IPR013763 -
Lja4g1554 352 PANTHER CYCLIN-D5-1 41 137 - -
Lja4g1554 352 Gene3D - 63 165 - -
Lja4g1554 352 PANTHER CYCLINS 186 299 IPR039361 -
Lja4g1554 352 PANTHER CYCLIN-D5-1 186 299 - -
Lja4g1554 352 SUPERFAMILY Cyclin-like 37 202 IPR036915 -
Lja4g1554 352 Pfam Cyclin, C-terminal domain 205 301 IPR004367 -
Lja4g1554 352 Gene3D - 171 304 - -
Lja4g1554 352 SUPERFAMILY Cyclin-like 183 275 IPR036915 -
Lja4g1554 352 CDD CYCLIN 70 144 IPR013763 -
Lja4g1554 352 Pfam Cyclin, N-terminal domain 69 202 IPR006671 -
Lja4g1554 352 PANTHER CYCLINS 41 137 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1554 Lja-Chr4 14527524 14529233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1554 8 254 Core Cell Cycle Gene Families AT4G37630 32.830 7.72e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1554 K18811 - gmx:100780266 301.212