Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1548 ATGGAGGAAATATCTTCTTCTAGTGTTGCAGTACCATTTACACTGGGAACTTTGATTCAAAAGGAGTCTGCAGTGAAGACTCACATGGAGATAACTGGGCTGAAGATCATGGCCAATACAGCAGCAGCTTTGATATTAAATCCTGCAGTGGAGCACCAAATCACAGTATCTGCTGAGGTAAAGGAAAATCAAGGTGGGGATGCAATTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGATCTTGAGTGAAAGCCAAATCCAGCCTATGAAAGAAGATGAATTGATGTTGTCTGTGGATTTTCAGTGTCCACATGATTCAAGCTTTCAATCTGTGGCTGCATCCTTGAAGACTGTTTATTCTGAAATCGATTCACCAACGATCATCAAGTTTGATGATAACATGAGTGGTAAGCCCTGTATAAACAAGCCACTTCCAGCATTAAAGCAAGAGCAGAACACAGTTTATGTTGCAATGGATATTGGGAGTGAAAATCTAAGTGGATCTGAGTCTGATCCAAAATTTTCTGCTATGCTTCTTGATCAGTTCCCAAAGGACAATAAAACTGGGAACACAAGCTACCAGAATGTTTCGGAATTTAGTGGTGGTCCTCTATGGGGTTTCTCATCAATTTGTGGAAATAGACCGGAGATGGAAGATGCTGTTGCTGTCAAGCCTCAACTTTTTCAAGTCCCTTCACAGATGCTAATGGATGAACATGTGAATGAAAACACAAAATACTCACCAGCCCACTTTTTTGGTGTCTATGATGGACATGGAGGCTTTCAGGTTGCTAATTATTGCCGGGAACGTCTTCATTCGGTGTTGATTGAGGAGATAGAAGCTGCACAATCAAGTTTGGCTGAAGCAAATAGGAGAGAGTGTTGGCAGGATCATTGGAAGAAAGCACTCTCCAATTGTTTTCAGAAAGTAGATGACGAGGTTGGTGGTATTGATGCAGGTAGTAGGGGAAACAACAATAGTGGATCTGAATCTGAGTCTAATATTGAACCTCTTGCTCCTGAGACTGCTGGCTCCACTGCAGTGGTTGCCATTTTAAGTCAAACTCACATAATAATTGCAAATTGTGGGGATTCAAGAGCAGTTTTGTATCGCGGGAAAGAAGCACTGCCATTATCTATTGACCACAAGCCGAACCGAGAGGATGAACGAGAAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATACCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGGGATAGATACTTGAAACCATGGATAATTCCAGATCCAGAAGTTACTATCATGCGTAGAGAGAAAAACGATGAGCTCCTAATTGTAGCATGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCCTGTGATGTTGCGAGGAAACGAATCCTTCTTTGGCACAAGAAGTATGGCAACAATGGAACAACAACAGGACAAGGTGAAGGGGTTGATCCTGCTGCTCAGTCAGCTGCAGAGTATCTATCTAAACTAGCCCTCCACAGAGGAAGTGATGATAACATCTCTATAATAGTGATTGACTTGAAACCTCAAAGAAAATTGAAGAGAAAGGCATAA 1599 0.4178 MEEISSSSVAVPFTLGTLIQKESAVKTHMEITGLKIMANTAAALILNPAVEHQITVSAEVKENQGGDAIVSEMVIECESNWILSESQIQPMKEDELMLSVDFQCPHDSSFQSVAASLKTVYSEIDSPTIIKFDDNMSGKPCINKPLPALKQEQNTVYVAMDIGSENLSGSESDPKFSAMLLDQFPKDNKTGNTSYQNVSEFSGGPLWGFSSICGNRPEMEDAVAVKPQLFQVPSQMLMDEHVNENTKYSPAHFFGVYDGHGGFQVANYCRERLHSVLIEEIEAAQSSLAEANRRECWQDHWKKALSNCFQKVDDEVGGIDAGSRGNNNSGSESESNIEPLAPETAGSTAVVAILSQTHIIIANCGDSRAVLYRGKEALPLSIDHKPNREDERERIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPDPEVTIMRREKNDELLIVACDGLWDVMTNEEACDVARKRILLWHKKYGNNGTTTGQGEGVDPAAQSAAEYLSKLALHRGSDDNISIIVIDLKPQRKLKRKA* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1548 532 Coils Coil 274 294 - -
Lja4g1548 532 MobiDBLite consensus disorder prediction 319 340 - -
Lja4g1548 532 Gene3D - 195 532 IPR036457 -
Lja4g1548 532 PANTHER ALPHABET, ISOFORM E-RELATED 105 531 - -
Lja4g1548 532 MobiDBLite consensus disorder prediction 322 340 - -
Lja4g1548 532 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Lja4g1548 532 Pfam Protein phosphatase 2C 229 515 IPR001932 -
Lja4g1548 532 ProSiteProfiles PPM-type phosphatase domain profile. 206 522 IPR001932 -
Lja4g1548 532 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 105 531 - -
Lja4g1548 532 CDD PP2Cc 208 522 IPR001932 -
Lja4g1548 532 SMART PP2C_4 196 520 IPR001932 -
Lja4g1548 532 SUPERFAMILY PP2C-like 194 524 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1548 Lja-Chr4 14472718 14475406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1548 142 531 PP2C-type Phosphatase Gene Family AT4G26080 53.283 3.98e-136 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1548 K14497 - gmx:100789207 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1548 4 14472718 14475406 Lja4g1548 4 14472718 14475406 ECH
Lja4g1548 4 14472718 14475406 Lja6g2034 6 48422006 48425138 PCT