Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1547 ATGAATAGAGGAAACTTTGGTCTCAATCTCAAACTCTCTGTTCCTGCACCTAATGAGGCCACTTATGCCAAATTCCTGACTCAAAGTGGCACCTTTAAGGATGGGGATCTGCTTGTGAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGAAGTGGAAGCTCCACCCCCAATCAAGGCAGTGGACAACCAGTTAAGTTTGGCAGACATAGACGTAATCAAAGTTGTTGGAAAGGGAAGTGGAGGGGTAGTGCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCATTAAAGATAATTCAAATGAACATTGAGGAGTCTATTCGCAAGCAGATAGCACAAGAACTGAAAATTAATCAATCAGCACAATGTCCTTATCTTGTTGTCTGCTACCAGTCATTTTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGCTCCTTGGCTGATCTTCTGAAGAAAGTTAAAACAATTCCAGAGCCTTATCTAGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAATGTATCTTCACCATGAAAGACATATCATCCACAGAGACTTAAAACCTTCTAATTTGTTGATTAATCATATAGGCGAAGTAAAGATTACCGACTTTGGTGTGAGTACAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCATGAGCATGGCTACAACTACAAGAGTGATATATGGAGTTTGGGACTAATATTGCTCGAGTGTGCTATGGGGCGGTTTCCATACGCACCACCAGATCAAAGTGAAACCTGGGAAAGTATTTTTGAACTTATTGAAACTGTCGTCGACAAACCTCCTCCTAGTGCTCCATCCGAACAGTTTTCTACAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGACCCAAAGGATAGATTGTCGGCTCAGGAACTTATGAGACTTCCTTTCACCAGCATGTATGATGACTTGGATGTGGATCTTTCAGCTTACTTCTCCAATGCAGGATCTCCACTTGCAACCTTATAA 1074 0.4106 MNRGNFGLNLKLSVPAPNEATYAKFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKAVDNQLSLADIDVIKVVGKGSGGVVQLVQHKWTSQFFALKIIQMNIEESIRKQIAQELKINQSAQCPYLVVCYQSFYDNGVISIILEYMDGGSLADLLKKVKTIPEPYLAAICKQVLKGLMYLHHERHIIHRDLKPSNLLINHIGEVKITDFGVSTIMESTSGQANTFIGTYNYMSPERINGSHEHGYNYKSDIWSLGLILLECAMGRFPYAPPDQSETWESIFELIETVVDKPPPSAPSEQFSTEFCSFISACLQKDPKDRLSAQELMRLPFTSMYDDLDVDLSAYFSNAGSPLATL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1547 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Lja4g1547 357 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1547 357 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 357 - -
Lja4g1547 357 SUPERFAMILY Protein kinase-like (PK-like) 67 340 IPR011009 -
Lja4g1547 357 SMART serkin_6 70 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1547 357 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Lja4g1547 357 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
Lja4g1547 357 Gene3D Transferase(Phosphotransferase) domain 1 150 353 - -
Lja4g1547 357 CDD PKc_MAPKK_plant_like 85 337 - -
Lja4g1547 357 ProSiteProfiles Protein kinase domain profile. 70 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1547 357 PANTHER MAP KINASE KINASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1547 Lja-Chr4 14467385 14472227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1547 1 328 MAP Kinase Kinase Gene Family AT4G29810 69.733 8.14e-177 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lja4g1547 Pkinase 9.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1547 K20603 - gmx:100789734 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1547 4 14467385 14472227 Lja4g1547 4 14467385 14472227 ECH
Lja4g1547 4 14467385 14472227 Lja6g2033 6 48418143 48422012 PCT