Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1545 ATGGTTTGGTTCCAATGCGAAGATTGTGGCGACAACCTCAAAAAGCCCAAGTTACCTAGCCACTTCCGAACATGTTCCGCTTACAAGTTGTCGTGCATTGACTGTGGCCAAATTTTCGGGCGTGACACCGTTCAGGATCACACTCAGTGCATTACAGAAGCAGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTGTGAACAATGCAGCTGCCAAGCCTAACAAAGATAGCAAGCAAAAGCCTGAAGTTGATATTAATGTGGGATTATCTGAACGGCCTCCATGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCGCTTCTTCTACATGCGGATGGAAAGAAACACAGGGTAAAAGCCCGAGCATTCCTTGCTTCAAAGCAACAGCCAGTCCAGGCTGACAAATCTGTCCCTGATGCAAAGGCTGCAGTGGAGACTGCTCCTAATGATGAGGCAAGAGATGACAAAAGTGCAGAGCAGCCGAAATTGCAAGAGTCTTCTAAACTAAATGACTTGAAAGCAGTGAATGAAGTTTCTTCCGAAAAGAAAAAGAGGAAACTTGGAGCATTGGAGGGTGAACTCACTAAGAAAAGCAGGAATGACACATCAGTTGACATGGGAAATGGGGAAGTAATTCAGGGTGACAAGGTCACGGGGGAGGGCAACTTGAAAAAAGAAGGGAAATCCGAACCTAACGGTACAAGTGCTGTCAAAAGTAAAATCAAATGGAAAAAGTTTATCAAATCAGCCTTGAAATCCCATCCTGATGGAACTTTGAAGATGAAGAAACTGAGAAAAGCTGTCTTCAAAGCACTCCAGGAGTCTGGGATTGTAGTCAATGAAACTGAATTGAGTGAGACACTTGAGCAGAAGATCAATTCCAGCTCCAGATTTGCAATTGAGAACAAGTATGTGCGATTGGTGGCCAAAGATTGA 945 0.4392 MVWFQCEDCGDNLKKPKLPSHFRTCSAYKLSCIDCGQIFGRDTVQDHTQCITEAEKYGPKGQGKTVNNAAAKPNKDSKQKPEVDINVGLSERPPWFCSLCNTKATSKQALLLHADGKKHRVKARAFLASKQQPVQADKSVPDAKAAVETAPNDEARDDKSAEQPKLQESSKLNDLKAVNEVSSEKKKRKLGALEGELTKKSRNDTSVDMGNGEVIQGDKVTGEGNLKKEGKSEPNGTSAVKSKIKWKKFIKSALKSHPDGTLKMKKLRKAVFKALQESGIVVNETELSETLEQKINSSSRFAIENKYVRLVAKD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1545 314 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Lja4g1545 314 MobiDBLite consensus disorder prediction 128 240 - -
Lja4g1545 314 Gene3D Classic Zinc Finger 72 125 - -
Lja4g1545 314 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 311 IPR039999 GO:0003677
Lja4g1545 314 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Lja4g1545 314 Gene3D - 1 50 - -
Lja4g1545 314 MobiDBLite consensus disorder prediction 178 203 - -
Lja4g1545 314 Pfam Zinc-finger of C2H2 type 95 119 - -
Lja4g1545 314 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Lja4g1545 314 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Lja4g1545 314 SUPERFAMILY beta-beta-alpha zinc fingers 83 128 IPR036236 -
Lja4g1545 314 MobiDBLite consensus disorder prediction 60 82 - -
Lja4g1545 314 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Lja4g1545 314 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Lja4g1545 314 MobiDBLite consensus disorder prediction 149 165 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1545 77 229 C2H2 Transcription Factor Family AT2G19380 39.869 2.40e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1545 K15263 - gmx:100790272 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1545 4 14436075 14439177 Lja4g1545 4 14436075 14439177 ECH