Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1539 ATGGTTATGGGTATTATCCACACACACAGACAATTTAATTGCTTTTTCCCTCTTCACTCTCTGCTGCTCACTGACAATTTCTTCTTCTACTTCTTCTTCTTATTCTCTGTTTGGTTCTTCATTATCTATCCATTGTTGCAGGCAAAATCACTTTTAGCAATGGAAGCTGCTGCAGCGCGCTCTATCCCTCGCACTGTCGAAGAGATTTTCAAGGACTTCATGGGCCGTAGGGCCGCTATGATCAAGGCTCTCACCACTGATGTTCAAGAATTTTACCAGCTCTGCAATCCTGAGAAGGAAAACCTTTGTCTGTATGGGTTCCCTAATGAGCAATGGGAAGTGAATTTGCCTGCTGAAGAAGTTCCTCCGGAACTTCCGGAGCCTGCACTGGGCATAAACTTTGCTAGGGATGGCATGCAAGACAAGGACTGGCTGTCTTTAGTTGCTGTTCATAGTGATGCCTGGTTACTTTCTGTGGCTTTCTTCTATGGGGCAAGATTTGGTTTTGACAAAGCTACCAGGAAACGCCTGTACGCTTTAATTAATGATCTACCTACAATATTCGAGGTTGTGACCGAAACTGCAGAGAAACAGGCTAAGGAAAAGTCATCAGTTTCAAACATCGCCAGCAACAATACAAAGACCAGTTCAAAAGCGGGAGGCTCTGAATCAGTGAAGTATTTGAAGCAAGTAAAGGACGAGGATGAAGAAGAAGATGATGAGGAGCATGGGGAGACATTGTGTGGCGCTTGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGTGACATATGTGAGAACTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCCCGGGCAGAACACATTAAGCATTATAAGTGCCCCTCATGCAGCAGTAAGAGAGTTCGGGTTTGA 906 0.4492 MVMGIIHTHRQFNCFFPLHSLLLTDNFFFYFFFLFSVWFFIIYPLLQAKSLLAMEAAAARSIPRTVEEIFKDFMGRRAAMIKALTTDVQEFYQLCNPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLSVAFFYGARFGFDKATRKRLYALINDLPTIFEVVTETAEKQAKEKSSVSNIASNNTKTSSKAGGSESVKYLKQVKDEDEEEDDEEHGETLCGACGENYASDEFWICCDICENWFHGKCVKITPARAEHIKHYKCPSCSSKRVRV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1539 301 MobiDBLite consensus disorder prediction 201 222 - -
Lja4g1539 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 296 IPR013083 -
Lja4g1539 301 SUPERFAMILY FYVE/PHD zinc finger 236 298 IPR011011 -
Lja4g1539 301 CDD PHD_AL_plant 247 297 IPR044104 -
Lja4g1539 301 Pfam PHD-finger 248 296 IPR019787 -
Lja4g1539 301 ProSiteProfiles Zinc finger PHD-type profile. 245 297 IPR019787 -
Lja4g1539 301 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 62 300 - -
Lja4g1539 301 PANTHER CPG BINDING PROTEIN 62 300 IPR045104 GO:0006355|GO:0042393
Lja4g1539 301 ProSitePatterns Zinc finger PHD-type signature. 248 294 IPR019786 -
Lja4g1539 301 Pfam Alfin 65 192 IPR021998 GO:0006355|GO:0042393
Lja4g1539 301 SMART PHD_3 247 295 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1539 Lja-Chr4 14332096 14335706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1539 54 301 Alfin-like Transcription Factor Family AT3G42790 69.048 1.88e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja4g1539 Alfin 1.8e-66 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1539 4 14332096 14335706 Lja3g1555 3 17064288 17068213 ECH
Lja4g1539 4 14332096 14335706 Lja3g5002 3 92142885 92146695 ECH
Lja4g1539 4 14332096 14335706 Lja1g4011 1 50881578 50886504 ECH
Lja4g1539 4 14332096 14335706 Lja4g1539 4 14332096 14335706 ECH