Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1537 ATGGCATGCGCTCCTTATCCTTATGGTGATCCTTTTTCTGGTGTTTCATTAGTTGCATATGGACCACAAGTTAGTATGCCGGGATTAGCATCCTCCAGAATAGCGTTACCACTTGATCTTGCAGAAGATGGGCCTATTTACGTGAATGCAAAACAATACCATGGTATACTGAGAAGACGACAGTCACGAGCAAAGCTTGAGGCTCGAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCCCGGCACCGCCATGCATTGAATAGGGTTAGGGGATCCGGAGGTCGCTTTCTCAGTGCCAAACAGAAGCAGCAGTCTAATGCTGAACGTGTCAATGTTTATCTAAGGAAAGATGCATCAGAGGTTGAAAGTCATGCCTCAAGAACTGGAAAAAGTGCATCTTCTATCACAAATTGCTCTGGCGTAACAAGTGTTTCCAGTAACAATGTAAACATTTGGCAGCCTGAGCTTAATTTCTTAGGGAACTCCGCAAACATGGGTGCGGCATTACATTGCAGTGGAGGTCTCAGCTTTGGTGGTGGAACTCAGCAATGTCCGGTTGGCCAGTGA 576 0.4549 MACAPYPYGDPFSGVSLVAYGPQVSMPGLASSRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEARNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQKQQSNAERVNVYLRKDASEVESHASRTGKSASSITNCSGVTSVSSNNVNIWQPELNFLGNSANMGAALHCSGGLSFGGGTQQCPVGQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1537 191 SMART cbf3 41 102 IPR001289 GO:0003700|GO:0006355
Lja4g1537 191 PRINTS CCAAT-binding transcription factor subunit B signature 45 67 IPR001289 GO:0003700|GO:0006355
Lja4g1537 191 PRINTS CCAAT-binding transcription factor subunit B signature 76 99 IPR001289 GO:0003700|GO:0006355
Lja4g1537 191 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 185 IPR001289 GO:0003700|GO:0006355
Lja4g1537 191 ProSiteProfiles NF-YA/HAP2 family profile. 42 102 IPR001289 GO:0003700|GO:0006355
Lja4g1537 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 185 - -
Lja4g1537 191 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 45 99 IPR001289 GO:0003700|GO:0006355
Lja4g1537 191 Gene3D - 42 104 - -
Lja4g1537 191 ProSitePatterns NF-YA/HAP2 subunit signature. 47 67 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1537 Lja-Chr4 14317270 14319998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1537 6 155 CCAAT-HAP2 Transcription Factor Family AT1G17590 45.860 1.54e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja4g1537 CBFB_NFYA 5.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1537 K08064 - gmx:100792905 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1537 4 14317270 14319998 Lja4g1537 4 14317270 14319998 ECH