Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1533 ATGGGTGATTTCAAAGGCTTCTTGACAGTGTCACCTCCTCCCTCTCCCTCTCCCTCAGATAACTCGAGACTGGCCATATTATGTTATGGCCTAGTAGTGGTGGGAACTGCAGCCATAGTATTAGCCGTATACAGCCTCATCATCATCAAACGGAGAGGGCGGCGCCACTTGCAATCACAGCCAATTAGGTTGGTTGAGGTGGTAACAGCAAGTAGCAGCACTGAGAACTCCCAAACGAGCTTCCTCTCAAGCTTCAAGTACAAGAAAGAAGCTGCAGAAAAAGAAAATGGTGTTGGTGGGGATGATGATTATGAATGCCCAGTTTGCCTATCAGCTTATGAAGAAGGGGAAGAGGTAAGGAAGCTTCCACGGTGCAAACACTGCTTCCACGCTCCGTGCATTGATATGTGGCTTCACTCTCACTTCGATTGCCCAATTTGCAGAACACCTGTAAGGACATTCTGTCATATCCCGCCGGAGAATTCTCGGCACAGGTTGGTGGAATCCGGTGGTGTCTCAGTTTGA 525 0.4876 MGDFKGFLTVSPPPSPSPSDNSRLAILCYGLVVVGTAAIVLAVYSLIIIKRRGRRHLQSQPIRLVEVVTASSSTENSQTSFLSSFKYKKEAAEKENGVGGDDDYECPVCLSAYEEGEEVRKLPRCKHCFHAPCIDMWLHSHFDCPICRTPVRTFCHIPPENSRHRLVESGGVSV* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1533 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 153 IPR013083 -
Lja4g1533 174 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 157 IPR044675 -
Lja4g1533 174 CDD RING-H2_EL5_like 105 148 - -
Lja4g1533 174 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g1533 174 Pfam Ring finger domain 105 148 IPR001841 -
Lja4g1533 174 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lja4g1533 174 SMART ring_2 106 147 IPR001841 -
Lja4g1533 174 SUPERFAMILY RING/U-box 96 162 - -
Lja4g1533 174 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1533 Lja-Chr4 14294638 14295334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1533 31 151 C3H Transcription Factor Family AT5G17600 35.075 2.92e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1533 - - aprc:113852327 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1533 4 14294638 14295334 Lja4g1533 4 14294638 14295334 ECH
Lja4g1533 4 14294638 14295334 Lja6g2020 6 48281486 48282669 PCT