Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1531 ATGGCGGTGAATCTGACGGCAAATGCAATTCCGGCGATTGTTTCCGGCGACCTGAACTTGAAGCCGCTGTTGCAGGTTCTCGATATCAAGTTGATTTCCAACAGCAAGCAGCAGGAGCGGTACCGCATTCTGCTTTCCGACGCCGTTTCCTCTCAGCAAGCCATGCTCGCCACTCAGCTCAACGATCAACTCCGAGCCGGACTAGTCAAGAGAGGTTCAATCGTTCAACTGATCGAGTATATTTGCAGTCCTATTCAGAATCGCAAGATAATCGTGGTGCTCAACATGGAAACTATAATATCAGATTATGAGATCATTGGAAATCCAAAATTATTTGTGGAAACTGATTTCCCAAATCAGGAAGCATTGCCTAATAACAAAATGCAGAACCCATCCAGGAGTAACAGTTATCATCTGCCTGCTCAAAATGCAAGTTGTAATATGCAGAATTTCAAGCCTACTGTTCAACCTCCATACCAACCACCACCATTTTACAAAGGTCATGGTGCGATTGTGAGAAATGAGGCCCCAGCACGTGTTATTCCAATAGCTGCTTTAAACCCTTATCAAGGTCGGTGGGCTATCAAAGCAAGGGTAACTGCAAAAGGGGATCTGCGCCGCTATAATAATGCTAAGGGAGATGGAAAAGTCTTCTCATTTGATCTCCTTGACGCTGATGGAGGTGAAATACGAGTAACTTGCTTTAACACGGCTGTTGATCGTTTCTATGATGTAATAGAGGTTGGTAGAGTTTACTTGATATCCAGAGGTAACTTGAAACCTGCACAGAAGAACTTCAACCATTTGAAGAATGAATGGGAAATACTTTTGGATTTGTCATCAGCTGTTGAACTTTGTCCAGATGAAGATGGTTCTATACCTAAACAGCAATTCTCCTTTAGGTCTATCAGTGATATTGAGAATGCTGACAGCAACTCCATACTTGATGTCATTGGGGTTGTGATATCTGTGAAACCATCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAATCTAAAGGACTGTTCTGGAAGGAGTGTTGAGCTAACCCTTTGGGGTGAGTTTTGCAACAGGGAAGGGCAGATGTTGCAAGAGATGATGGATGCTGGCTTTTTCCCCACTCTGGCAGTCAAAGCTGGGAAAGTCAATGACTTCAGTGGGAAATCTATAGGGACTATTTCTTCCACACAGCTTTTCATAAATCCAGATTTCTCTGAGGCACATAGCTTAAGAGAGTGGTATGATCGAGTGGGAAAAGATTCTGCTTCCCTGTCAATTTCTAAGGACATTATACCTGGAGGACCTAAGAATGATGTACGTAAAACTGTATCTCAGATCAAGGATGAAGGACTTGGGCGGTCAGAAAAGCCTGATTGGATGACACTGAGGGCAACAATATCTTTCATCAAGACAGATACATTTTGTTACACAGCTTGTCCTTTGATGATTGGAGATCGACAGTGCAACAAGAAAGTGACTAGATCAGGAAACAGATGGCAATGTGATAGGTGCAACCAAGAGTTTGATGAATGTGACTACCGCTATCTTCTCCAAGCTCAAATTCTGGATCATACTGGAATAACCTGGGTAACTGCTTTCCAGGAAACAGGGGAAGAGATTATGGGTTACCCTGCAAAGGAGCTGTACATGTTGAAGTATGAACAGCAGGATGATGAGAAGTTTGCTGGAATAATCAAGAGTAGACTCTTCAACCAATTTGTTTTCAGGCTGAAAATCAAAGAGGAATTGTATGGTGATGAACAGAGGGTGAAGGTCACAGTAATGAAGGCAGGTGAGGTGAGTTACTCTTCAGAGAGTGGTTACATGCTTGATTTGATTTCAAAGTTCAAAGTTTAA 1875 0.4261 MAVNLTANAIPAIVSGDLNLKPLLQVLDIKLISNSKQQERYRILLSDAVSSQQAMLATQLNDQLRAGLVKRGSIVQLIEYICSPIQNRKIIVVLNMETIISDYEIIGNPKLFVETDFPNQEALPNNKMQNPSRSNSYHLPAQNASCNMQNFKPTVQPPYQPPPFYKGHGAIVRNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDADGGEIRVTCFNTAVDRFYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPDEDGSIPKQQFSFRSISDIENADSNSILDVIGVVISVKPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISSTQLFINPDFSEAHSLREWYDRVGKDSASLSISKDIIPGGPKNDVRKTVSQIKDEGLGRSEKPDWMTLRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNRWQCDRCNQEFDECDYRYLLQAQILDHTGITWVTAFQETGEEIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVFRLKIKEELYGDEQRVKVTVMKAGEVSYSSESGYMLDLISKFKV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1531 624 CDD RPA1_DBD_B 314 421 - -
Lja4g1531 624 SUPERFAMILY Nucleic acid-binding proteins 180 292 IPR012340 -
Lja4g1531 624 Pfam Replication factor-A C terminal domain 465 613 IPR013955 -
Lja4g1531 624 SUPERFAMILY Nucleic acid-binding proteins 297 424 IPR012340 -
Lja4g1531 624 Gene3D - 292 430 IPR012340 -
Lja4g1531 624 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Lja4g1531 624 Pfam OB-fold nucleic acid binding domain 194 269 IPR004365 GO:0003676
Lja4g1531 624 SUPERFAMILY Nucleic acid-binding proteins 446 622 IPR012340 -
Lja4g1531 624 Pfam Replication protein A OB domain 303 407 IPR031657 -
Lja4g1531 624 Gene3D - 179 289 IPR012340 -
Lja4g1531 624 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja4g1531 624 Gene3D - 3 112 IPR012340 -
Lja4g1531 624 Pfam Replication factor-A protein 1, N-terminal domain 5 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lja4g1531 624 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 621 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g1531 624 CDD RPA1_DBD_C 449 621 IPR013955 -
Lja4g1531 624 CDD RPA1_DBD_A 182 285 - -
Lja4g1531 624 PANTHER REPLICATION FACTOR A 1, RFA1 2 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g1531 624 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 619 - -
Lja4g1531 624 Gene3D - 436 623 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1531 Lja-Chr4 14288602 14291454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1531 24 621 Core DNA Replication Machinery Family AT2G06510 69.530 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1531 K07466 - zju:107409151 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1531 4 14288602 14291454 Lja4g1531 4 14288602 14291454 ECH