Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1527 ATGGGAAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACTGCTCATGAAGACAAAATCCTCACAGATTACATCAGGGTCCATGGTGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTGAACAGATGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATCTCCTCTGATGAAGAAGAGCTTATCATCAGGCTTCACAAACTTCTGGGAAACAGATGGTCTCTAATAGCAGGAAGGCTTCCCGGGCGAACAGACAATGAAATAAAGAATTACTGGAATAGCAATTTGGGAAAAAGAGTTAAAAGTCTCAACCAAACAAACACCTGTTCTACCAATTTGGCCACTCACTCCCCCTCTCTATCTCCTTCTAAGCCACAATCCCTTCTGGTCCGTACAAAAGCTACCAAGTGCTCCAAGGTGTTGTTCAGAAACTCACTCCCAAACTCATCACAAACAATGAAAATGCAGAACAAGTCAGAATCAGAGGCAGAACCAGAAACAGATCAAAGGCCATTGCCTGTAGATTCTGTAGCCAGAAACTCAATTTCAAAGAGTAACAAAATGGAAACAAGTAATGGAGTTTTGGCATTTCCCAGAGAAAATCAAAAGGAACAGTCAACAGATTTGCTGATGGACTTCAACGTTGGTGATTTTTGCTTATCTGATCTTCTGAACTCTGATTTTGATGGCATGTGCAACCTAGCTAACAATGACAACAACAATGAGCCATTGTCTCCTTGTTCAGACCAACCTCCTCTGTTCTCTGATGAAATTTTCAAGGATTGGACACGATGCAGTTTCGCTGATGATGAAACAAATGTGTCCAACAATCTTCATTCTTTCACTTCATTCCTTGAGTCTGGTGAGGAGATACTAGGAGAATCCTAA 936 0.4156 MGRSPCCSKEGLNRGAWTAHEDKILTDYIRVHGEGKWRNLPKRAGLNRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSNLGKRVKSLNQTNTCSTNLATHSPSLSPSKPQSLLVRTKATKCSKVLFRNSLPNSSQTMKMQNKSESEAEPETDQRPLPVDSVARNSISKSNKMETSNGVLAFPRENQKEQSTDLLMDFNVGDFCLSDLLNSDFDGMCNLANNDNNNEPLSPCSDQPPLFSDEIFKDWTRCSFADDETNVSNNLHSFTSFLESGEEILGES* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1527 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja4g1527 311 SMART sant 13 63 IPR001005 -
Lja4g1527 311 SMART sant 66 114 IPR001005 -
Lja4g1527 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g1527 311 CDD SANT 16 61 IPR001005 -
Lja4g1527 311 Gene3D - 71 135 - -
Lja4g1527 311 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 260 - -
Lja4g1527 311 PANTHER TRANSCRIPTION FACTOR TT2 1 260 - -
Lja4g1527 311 MobiDBLite consensus disorder prediction 161 191 - -
Lja4g1527 311 Gene3D - 14 66 - -
Lja4g1527 311 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja4g1527 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g1527 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g1527 311 CDD SANT 71 112 IPR001005 -
Lja4g1527 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g1527 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1527 Lja-Chr4 14242180 14243690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1527 1 181 MYB Transcription Factor Family AT5G49330 53.591 3.80e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g1527 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1527 K09422 - gmx:100802704 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1527 4 14242180 14243690 Lja3g1579 3 17327756 17328926 ECH
Lja4g1527 4 14242180 14243690 Lja4g1527 4 14242180 14243690 ECH
Lja6g2013 6 48225428 48227164 Lja4g1527 4 14242180 14243690 PCT