Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1524 ATGATGAATGGTTCAAGGAACAGGTTCCCTTTTACTTCTTCTCAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATTTCTATTCCACCTGATCTTCTCTTCACCATCAAGATGGACTCTCCTCTGACTTCAAGGCTTTTGCCTCACCAGTCTCAACACTTTGGTTGGAACTATTTGCCTATGGGTTTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGCAGAAGAACTGATGGCAAGAAATGGAGGTGCTCCAAAGAAGCTTACCCAGATTCAAAGTACTGTGAGAGGCACATGCATAGAGGGAAGAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACAACAGCAATAGATGCAGGAGATGCTTCAGCAGCACCAACAACAATGTTATCTATCACAAAAAATAGTCCTGCACTCACCCCAACAACCACTCATGACCCTTACCATCACCACCATCACCCTCAAAACTCTTCCTATGGCTCATCTTCTTCCCATCTTCAGCACCCTTTCCTCTACCATCATTCCCCACCTTCAAGGCCTTCTGGTGTTGGTTTGTCTTTTCAAGACAACAACAGTGCTCCTATGTTTCTTGACACTGGTTCTTGCTCTCACAATAACAACACTGATTGCAGGTATGTTTATGGACTGAAAGAAGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCTGGAACCATGAGAAGCTTCTCTGCTTCCTCCATTGATGATCCTTGGCAGCTCACACCACTGACTATAAGCTCCTCATCCTCTTCAAAACAGAGGAACTGCTCTGGTTTATCCAATTCCAATGACACCAACAACAACAACGAGTACTCTTACTTGCAACTTCAGAGCCTCAGTGACAACTCAAAGCAAACACATCAAGATCATGGTTTCTATAGTGATAACAAGCCTGAAAATTTCATGAAACTTGGGAAAGAAGAACCTCAGAAGACAGTTCATCGCTTCTTTGATGAATGGCCCCCCAAAAGCAGAGGATCATGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACATCTTCCCATGATTTCAAAACTTTCAGTTCCTCAACCCCACGAGATGGTTGA 1143 0.4401 MMNGSRNRFPFTSSQWQELEHQALIYKYMASGISIPPDLLFTIKMDSPLTSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAIDAGDASAAPTTMLSITKNSPALTPTTTHDPYHHHHHPQNSSYGSSSSHLQHPFLYHHSPPSRPSGVGLSFQDNNSAPMFLDTGSCSHNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSIDDPWQLTPLTISSSSSSKQRNCSGLSNSNDTNNNNEYSYLQLQSLSDNSKQTHQDHGFYSDNKPENFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFKTFSSSTPRDG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1524 380 Pfam QLQ 10 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja4g1524 380 MobiDBLite consensus disorder prediction 145 196 - -
Lja4g1524 380 PANTHER GROWTH-REGULATING FACTOR 5 3 356 - -
Lja4g1524 380 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja4g1524 380 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja4g1524 380 PANTHER - 3 356 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja4g1524 380 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Lja4g1524 380 Pfam WRC 76 118 IPR014977 -
Lja4g1524 380 MobiDBLite consensus disorder prediction 165 180 - -
Lja4g1524 380 MobiDBLite consensus disorder prediction 260 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1524 Lja-Chr4 14215180 14217589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1524 8 118 GRF Transcription Factor Family AT3G13960 69.912 2.76e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja4g1524 WRC 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1524 - - gmx:100783524 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1524 4 14215180 14217589 Lja4g1524 4 14215180 14217589 ECH
Lja4g1524 4 14215180 14217589 Lja6g2010 6 48165560 48168092 PCT