Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1519 ATGGTAGAAGCTGTACTTAAGACACCCAGCGACAGGGAAAACCCTTCAAAGGGTACCAGTCGCAATGCGCAGAAAAAGCGCAAGAGTGGGGGCGAAAGCAGTATATGCAGTAGAAGCACTTTCAACAATGAAGCTCAGTTGGCTGCTGTGGAACGAGCAAAAGAGATTCAAGCTAGCTTATCTCCTGAATTCCCCAGCATTGTTAAGCACATGCTCCCATCTCATGTAACTGGAGGGTTTTGGCTTGGTCTTCCAAAAAAATTCTGTGAGTTGTATTTGCCTAAGGCTGATACTTTCATTGCTTTGGAAGATGAAAGTAGGGAGCTATACCAAGCCAAATACCTTGCTGAAAAGGTGGGCTTGAGTGGTGGATGGAGGGGGTTTTCCATAGCTCACAACTTACTTGAGATGGATGTTCTTGTTTTCCATTTGATCCAACCTCACAAGTTTAAGGTGTACATTGTAAGGTCACAGAAGCCAGATGAGGTGGATGGTGCTCTTGGCCTGCTCAAGCTGGATAAGTGTGAAAAAGCACCAAAGAATGAACTGGATATGGAAAGTATTGCTGGCGCTATTCAAGGAAGTGATCCAGAGAATAGGAGGGAGGTTTTGGTTTCTAACTCAACTCAAACTGAACAGCTTGACCAGGAAAGTGGAGATTTAAGCCTTGCAGGGATCAGATTAGCAGAATTTCCTATCAGGTTTGAAGAAGTGACTGGCATTGAGAATTTCAGCATCATACTAGATCGCTGGGTTATGGATTCAAAATTCACTGAAGACCATCGGGCCAAGTATTATGAGCTCTGTCGCAGCCAGAGATGTTTTCTTCATGAGAACCTTCTTGGAGGTCTTAACTTCAACCTGATGGTTGGAATGATTCAGGAGACTATTGTCATTGCTGAGGCCATTGAAGTTAGCAAGATCACAACCCCTATGGATGATTTAGTTGTATGGGACAAAACATTGAAAGGCTTAGAAATCATGGGGATGAATGTGAGATTTTTGCTGACTAGGCTCGACAAGCTGATGAAACTAGCCTTGAAACTGAAGAGGTACAAAGATGCAAGGCTTGAACGTCTCCAAGCTAAGGAGGAGCTGGAAGCAATAGAAGAGATTGCTTCGGAAGTGAAAAAGACCATAAAGAAACTTGATGAAGAGATTGCAATGCAGGAGAGCCCTGAGAAGGTGGAGGCTATGTTTGAAGAACTGGCTAATGCTCCTTGGTGA 1227 0.4393 MVEAVLKTPSDRENPSKGTSRNAQKKRKSGGESSICSRSTFNNEAQLAAVERAKEIQASLSPEFPSIVKHMLPSHVTGGFWLGLPKKFCELYLPKADTFIALEDESRELYQAKYLAEKVGLSGGWRGFSIAHNLLEMDVLVFHLIQPHKFKVYIVRSQKPDEVDGALGLLKLDKCEKAPKNELDMESIAGAIQGSDPENRREVLVSNSTQTEQLDQESGDLSLAGIRLAEFPIRFEEVTGIENFSIILDRWVMDSKFTEDHRAKYYELCRSQRCFLHENLLGGLNFNLMVGMIQETIVIAEAIEVSKITTPMDDLVVWDKTLKGLEIMGMNVRFLLTRLDKLMKLALKLKRYKDARLERLQAKEELEAIEEIASEVKKTIKKLDEEIAMQESPEKVEAMFEELANAPW* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1519 408 Gene3D - 43 159 IPR015300 -
Lja4g1519 408 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 19 341 IPR044837 -
Lja4g1519 408 Pfam B3 DNA binding domain 68 157 IPR003340 GO:0003677
Lja4g1519 408 SUPERFAMILY DNA-binding pseudobarrel domain 60 157 IPR015300 -
Lja4g1519 408 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 19 341 - -
Lja4g1519 408 MobiDBLite consensus disorder prediction 1 37 - -
Lja4g1519 408 CDD B3_DNA 65 156 IPR003340 GO:0003677
Lja4g1519 408 Coils Coil 352 386 - -
Lja4g1519 408 ProSiteProfiles B3 DNA-binding domain profile. 67 158 IPR003340 GO:0003677
Lja4g1519 408 SMART B3_2 67 158 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1519 Lja-Chr4 14159898 14162357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1519 35 156 B3 DNA Binding Superfamily AT3G19184 53.279 5.60e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja4g1519 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1519 - - ccaj:109816480 398.667