Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1508 ATGAAATTCACATGGAAATCGATCTTCCCCAGTTGCTATAAAGGTGATGAGTACTCGTCGCCGGCGAAGCCAGCGACGGCGACGGTGGTGGCTACGAAGACCGGCGGTTCTTCCAACAGGATTTCCATGTCGGATTTGAGTTTTCCAAGCGCCACAGCATTCAATGAGGATCTCTCAATTTCTCTAGCAGGTTCTAACCTCCATGTTTTCACACTAGCTGAGCTCAAGATCATCACACAGGGCTTCTCCTCCAGCAACTTCCTTGGAGAAGGAGGGTTTGGACCTGTGCATAAAGGGTTCATTGATGATAAGCTCAGGCCTGGTCTCATGGCTCAGCCTGTGGCTGTTAAGCTCTTGGATCTGGATGGCTCTCAGGGTCATAAAGAGTGGCTGACTGAAGTTGTGTTTCTGGGTCAACTTACCCATCCACACCTTGTGAAATTGATTGGATATTGCTGTGAAGAAGAACATAGGCTTCTGGTGTATGAGTATTTACCAAGAGGAAGCTTAGAGAATCAGCTATTTAGAAGATATTCAGCCTCTTTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCTAAGGGTCTAGCTTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGGGATTTCAAAGCTTCAAACATCTTGTTAGACTCTGACCACAATGCAAAGCTCTCTGATTTTGGGTTGGCAAAAGATGGTCCTGAAGGAGATGACACACATGTTTCCACTAGAGTTATGGGCACACAAGGGTATGCAGCACCAGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTGGTCCTCTTGGAGATTCTAACAGGAAGAAGGTCAGTGGACAAGGCACGCCCACCAAGAGAACAAAACCTAGTGGAATGGGCCAGGCCAGTTTTGAATGATTCACGGAAACTTAGTAGAATAATGGATCCAAGATTAGAGGGACAGTACTCTGAGATGGGTGCAAAAAAAGCAGCTGCATTAGCTTATCAATGCCTCAGCCACAGGCCAAGGAATAGACCAACAATGACCACAGTGGTTAAGGCTCTTGAGCCTCTACAGGATTTTGATGACATTCCAATTGGTCCTTTTGTTTACACGGTTCCAGCTGAGAATAATGAAGTACAGCAGAAAGATGCAAAAGAGGGTGAAAGTACACCTAGGGAGAGGAAGAGAGAAAATGGTGGCTATCATAGAAATAACAATCTCAGCAATGGCCGTAGGCACAGTTCTGATGGAAATGTGACACCTAGAGATGCAAGAGAATGTGACACACCTAAGGAGAGGAAGAGGGAAAGTGGTCACCGGAATCACCATCGCCGGAAGCATCCACTTAAATCACCTGATTCACGATCGCGGTCACGGAATGAGGTGCACCAAAATGGTGAAAGAAGAAGTGGGTCAGGCTCACCTGAGTCCGCAACTGTTGTTGTGGCCGCAACACAAAATGAGGCGCACCAAAATGGCAAAAGAAGTGGATCACACTCACCTGAGTCAGCAACTGCAATTGTGGCCGCAGCACCGAATGAGGTGCACCAAAATGGTAGAAGAAGAAGTGGATCACACTCACCTGAGTCGGCAACTGCAATTGTGGCCCCAGCACCGAATGAGGTGCACCAAAATTGTAGAAGAAGTGGATCACACTCACCTGAGTCCGCAGCACGGCATGAGGCTCACCAAAATGACAGAAGAAGTGGATCACACTCGCATGAGTCCGCAACTCCAATTGTGGCTGGAACATGGAATGAGGTGCACCAAAATGACACAAGAAGTGGATCATACTCATCTGAGTCTGCAACTGCAATTGTGGCCGCAGCGTAA 1848 0.4686 MKFTWKSIFPSCYKGDEYSSPAKPATATVVATKTGGSSNRISMSDLSFPSATAFNEDLSISLAGSNLHVFTLAELKIITQGFSSSNFLGEGGFGPVHKGFIDDKLRPGLMAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLTHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHEAKKPVIYRDFKASNILLDSDHNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEILTGRRSVDKARPPREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEMGAKKAAALAYQCLSHRPRNRPTMTTVVKALEPLQDFDDIPIGPFVYTVPAENNEVQQKDAKEGESTPRERKRENGGYHRNNNLSNGRRHSSDGNVTPRDARECDTPKERKRESGHRNHHRRKHPLKSPDSRSRSRNEVHQNGERRSGSGSPESATVVVAATQNEAHQNGKRSGSHSPESATAIVAAAPNEVHQNGRRRSGSHSPESATAIVAPAPNEVHQNCRRSGSHSPESAARHEAHQNDRRSGSHSHESATPIVAGTWNEVHQNDTRSGSYSSESATAIVAAA* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1508 615 MobiDBLite consensus disorder prediction 384 406 - -
Lja4g1508 615 Gene3D Phosphorylase Kinase; domain 1 46 164 - -
Lja4g1508 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lja4g1508 615 MobiDBLite consensus disorder prediction 579 609 - -
Lja4g1508 615 SUPERFAMILY Protein kinase-like (PK-like) 59 360 IPR011009 -
Lja4g1508 615 MobiDBLite consensus disorder prediction 472 508 - -
Lja4g1508 615 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 28 418 - -
Lja4g1508 615 MobiDBLite consensus disorder prediction 558 578 - -
Lja4g1508 615 MobiDBLite consensus disorder prediction 441 457 - -
Lja4g1508 615 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1508 615 MobiDBLite consensus disorder prediction 421 440 - -
Lja4g1508 615 PANTHER OS01G0588500 PROTEIN-RELATED 28 418 - -
Lja4g1508 615 MobiDBLite consensus disorder prediction 379 615 - -
Lja4g1508 615 Pfam Protein tyrosine and serine/threonine kinase 86 359 IPR001245 GO:0004672|GO:0006468
Lja4g1508 615 CDD STKc_IRAK 88 362 - -
Lja4g1508 615 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1508 Lja-Chr4 13937584 13941024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1508 68 359 Glycoside Hydrolase AT3G07070 53.559 7.07e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g1508 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1508 - - lja:Lj4g3v2213630.1 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1508 4 13937584 13941024 Lja4g1508 4 13937584 13941024 ECH
Lja4g1508 4 13937584 13941024 Lja6g1999 6 47978973 47981651 PCT