Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1499 ATGGCCGCTGTTCGCCGCCGTCTCTCTCTCCTCCTCCTCCTCACCCTCTTCACCTCCCTCTCCCCCACCTTCTCCGCCAACGAGAACCAAGCCCTCCTCAAGCTCAAGCAATCCTTCATCAACCCCAAGTCCCTCTCCTCCTGGGTTCCCAACCAGAACCCCTGTTCTTCCAAGTGGGTCGGTGTCATCTGCTTCAACAACATCATCTCCAGCCTCCACCTCACCGATTTAGACCTCTCCGGCACGATCGACATCGAAGCTCTCATGCAGATTCCCACCCTCCGAACCATCAGCTTCGCCAACAACTCCTTCTCCGGCCCAATGCCGGAGTTCAACAAACTCGGTGCCCTCAAAGCTATCTACCTCTCGCAGAACCAATTCTCAGGGCCAATCCCTGCAGATTTCTTCTCCCACTTAGCTTCCCTGAAGAAAATCTGGATTTCCAACAACAAATTCTCCGGCAACATCCCTGACTCGTTAACCAAGCTTCGTTTCCTCTCGGAACTCCACCTCGAGAACAACGAGTTTACAGGCTCTGTTCCTGAGCTGAAACAGGACATCAAATCACTAGACATGTCGAACAACAAGCTACAAGGCGCAATCCCCGCCGGAATGTCGCAGTACGGCGCGAAATCATTCTCCGGCAACGAAGGGCTCTGCGGGAAGCCGCTTGACAACGAGTGCGACCCGTCTTTGACACCGTCTGGAACAGGGCAAGGAGGGTTCACCTGGGTGATGAAGATCATCGCGATGCTCTTCATTGTGGCGGTGATGATGGTGGTGTTCATGTTCGTGAAGTCTCGGCGTGCCCGGGATGATGATTTCAGCGTGATGAGTAGGGAGAATCTGGACGAGGTTGTGCAGGTGCACGTACCGAGTTCGAACCATAGCAGGGCTTCGGAGATTAGCAAGAAGGAATCATCGAAGAGAGGGTCGTCGAGGAACGGGATGGGTGATCTTATCATGGTGAATGACGAGAAGGGTGTGTTTGGTTTGCCGGATTTGATGAAGGCTGCGGCGGAGGTTTTGGGGAACGGTGGATTGGGTTCGGCTTACAAGGCTGCCATGTCGAATGGATTGTCTGTGGTGGTGAAGAGGATGAGGGAGATGAACAAAGCGAGCAGAGACATCTTTGATGCTGAGATGAGAAGGTTTGGGAGGCTTAGGAATCGCAATATCATGACTCCTTTGGCTTACCATTACCGCAGGGAGGAAAAGTTGTTTGTCACTGAGTACATGCCCAAAGGAAGCTTGTTATATGTTTTGCACGGTGATAGAGGGACTAGTCATGCTGAGCTGAACTGGCCTACCCGTTTGAAGATTGTGAAGGGAATTGCAAGAGGGTTAGGCTTTCTCTATACTGAATTTTCTGCTGAAGACCTGCCCCATGGAAACCTCAAATCCAGCAATGTTCTGCTAGATGACAGTTACGAGCCTCTCTTAGGTGACTTTGCCTTTCACCCCCTTATCAACCAGAGCTATGCCGTGCAGACAATGTTTGCCTACAAAACTCCCGATTTCATGCTGTACCAGCAAATTTCGCAGAAGACCGATGTTTACTGCCTCGGAATCATCATTCTTGAAATCATCACTGGGAAGTTCCCTTCTCAGTATCACAGCAACGGCAAGGGTGGGACTGATGTGGTGCAATGGGTCTTCACAGCGATTTCCGAGAGAAGAGAGGCAGAATTGATTGATCCAGAGTTGGCAACGAGCAATAATGCGAACTCAATGGGTCAAATGTTGCAACTTCTCCAAATTGGGGCTGCTTGCACGGAGAGCAACCCCGAACAAAGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTACAGGTTTAA 1845 0.51 MAAVRRRLSLLLLLTLFTSLSPTFSANENQALLKLKQSFINPKSLSSWVPNQNPCSSKWVGVICFNNIISSLHLTDLDLSGTIDIEALMQIPTLRTISFANNSFSGPMPEFNKLGALKAIYLSQNQFSGPIPADFFSHLASLKKIWISNNKFSGNIPDSLTKLRFLSELHLENNEFTGSVPELKQDIKSLDMSNNKLQGAIPAGMSQYGAKSFSGNEGLCGKPLDNECDPSLTPSGTGQGGFTWVMKIIAMLFIVAVMMVVFMFVKSRRARDDDFSVMSRENLDEVVQVHVPSSNHSRASEISKKESSKRGSSRNGMGDLIMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMSNGLSVVVKRMREMNKASRDIFDAEMRRFGRLRNRNIMTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLGFLYTEFSAEDLPHGNLKSSNVLLDDSYEPLLGDFAFHPLINQSYAVQTMFAYKTPDFMLYQQISQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELATSNNANSMGQMLQLLQIGAACTESNPEQRLNMKEAIRRIEEVQV* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1499 614 SUPERFAMILY L domain-like 25 207 - -
Lja4g1499 614 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lja4g1499 614 Gene3D Transferase(Phosphotransferase) domain 1 414 614 - -
Lja4g1499 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 614 - -
Lja4g1499 614 Gene3D Ribonuclease Inhibitor 137 229 IPR032675 -
Lja4g1499 614 ProSiteProfiles Protein kinase domain profile. 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1499 614 SUPERFAMILY Protein kinase-like (PK-like) 341 609 IPR011009 -
Lja4g1499 614 PANTHER LRR RECEPTOR-LIKE KINASE 6 614 - -
Lja4g1499 614 MobiDBLite consensus disorder prediction 291 317 - -
Lja4g1499 614 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Lja4g1499 614 Gene3D Phosphorylase Kinase; domain 1 343 413 - -
Lja4g1499 614 Pfam Protein kinase domain 341 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1499 Lja-Chr4 13869796 13872358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1499 1 614 Receptor kinase-like Gene Family AT3G42880 51.869 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja4g1499 Pkinase 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1499 - - lja:Lj5g3v1749280.1 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1499 4 13869796 13872358 Lja4g1499 4 13869796 13872358 ECH
Lja4g1499 4 13869796 13872358 Lja6g1985 6 47805734 47808573 PCT