Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1497 ATGTCGAGTTCATCGGAGATTTCAGCTGCTAAATCGCCGGAGAAATCCACTACGTTCTCTCAAACCTGCAATTTACTAAGCCAATACCTTAAAGAAAAGGGTAGCTTCGGAGACCTCACCTTAGGCATGGAACGCAACGTTCAAGGGTCCCCTGTAACCACTATGGAGTTGTTTCCTATGGCAACACAAAACTTGAAGAGTATGAATTTGTTCTATCCACCACAACAATCTGAGGTTCCAACATTGGTGAAATCAAGTGCTATGGGCAATGAACCTAAAGCTGCACAGTTGACAATGTTTTATGAGGGGCAAGTTATTGTGTTTGATGATTTTCCTGCTGAGAAAGTGAAGGAGATCATGGCATATGCCAGCAAGGGAGTCTCTCAAAGCCAGAACAACAACAACTCTGCATATGCTTGCAATCAGAATCAGCCTTCAATTAGGCCAATTGTTCATGATCTACCAATTGCTAGGAAAGTTTCCCTCCACCGTTTCCTGGAGAAGAGGAAGGATAGAATCTCTTCCAAAGCACCATATCAAATCTCTGCTCCTGAGAAACCTGTTGAATCCATTTCATGGCTTGGGTTAGGTGCTACACCAACACAAATCTGA 612 0.433 MSSSSEISAAKSPEKSTTFSQTCNLLSQYLKEKGSFGDLTLGMERNVQGSPVTTMELFPMATQNLKSMNLFYPPQQSEVPTLVKSSAMGNEPKAAQLTMFYEGQVIVFDDFPAEKVKEIMAYASKGVSQSQNNNNSAYACNQNQPSIRPIVHDLPIARKVSLHRFLEKRKDRISSKAPYQISAPEKPVESISWLGLGATPTQI* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1497 203 Pfam tify domain 91 124 IPR010399 -
Lja4g1497 203 ProSiteProfiles Tify domain profile. 90 125 IPR010399 -
Lja4g1497 203 Pfam Jas motif 155 180 IPR018467 -
Lja4g1497 203 PANTHER PROTEIN TIFY 10A 11 197 - -
Lja4g1497 203 SMART tify_2 90 125 IPR010399 -
Lja4g1497 203 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 11 197 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1497 Lja-Chr4 13856849 13858701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1497 1 198 Tify Gene Family AT1G19180 43.028 2.57e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja4g1497 tify 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1497 K13464 - gmx:100527510 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1497 4 13856849 13858701 Lja4g1497 4 13856849 13858701 ECH
Lja4g1497 4 13856849 13858701 Lja6g1982 6 47783378 47785815 PCT