Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1496 ATGCAGCCAGAGAGATTAAGGCAACAAGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTCACACCCCCTCAGATAGAACCTATCATGAGTGGGAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTCTATGTGGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTATTCGCAGGTGCAGGCGCTCTTGAAGGATGCAAGCTTATTCGGAAAGAGAAGTCATCGTATGGCTTTGTGGACTACTATGATCGAAGTTCAGCTGCATTTGCTATTGTAACCCTCAATGGGAGGAATCTTTTTGGTCAGCCTATTAAAGTTAATTGGGCATATGCTAGAAGCCAGAGAGAGGACACCTCAGGCCACTTTAATATATTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACATTATACGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGCAGACAGGTCGATCCAGGGGTTTTGGATTTGTCTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCTATTAATGATCTCACTGGGAAGTGGCTTGGAAGTAGACAAATTCGTTGTAATTGGGCCTCAAAAGGGGCTAATGCCAATGATGAAAAGCAGAGCTCAGATTCCAAAAATGTTGTGGAGTTAACTAATGGAACATCTGGAAGCCAGGAAATAACCAATGATGATGCTCCAGAGAAGAATCCTCAGTACACAACTGTTTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCCCTTGGTGCTGGAACTATTGAAGACGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGCACCCATGCTGAAGCAGCTCTTGCTATACAAATGGGTAATGCTCGGGTTCTGTTTGGCAAGCCTATCAAGTGTTCATGGGGTAGCAAACCCACTCCTCCAGGAGCAGCCTCTTCTCCTCTTCCCCTTCCGCCACCGTCTTCTGCCCCTGTGCCTGCTGGATTTTCACTTGCTAGTCTTGCAGCTTATGAACGCCAGATGGCATTAAGCAGAATGAATGGTGCACATGCTGCCCTTCTTCAACAGCAGGGTTATCAAAATGCCGCGAAGCAGGCAGCCATGGGAATGGGTGCTCTCGGGGCTGCTGCTTACGATACTGGATTCCAGGGTGTTGGGACCACCCAGCATCTTATGTACTATCCTTAA 1251 0.4724 MQPERLRQQAMMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSKPTPPGAASSPLPLPPPSSAPVPAGFSLASLAAYERQMALSRMNGAHAALLQQQGYQNAAKQAAMGMGALGAAAYDTGFQGVGTTQHLMYYP* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1496 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Lja4g1496 416 MobiDBLite consensus disorder prediction 210 248 - -
Lja4g1496 416 CDD RRM1_TIA1_like 48 118 - -
Lja4g1496 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Lja4g1496 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Lja4g1496 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 319 IPR000504 GO:0003723
Lja4g1496 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Lja4g1496 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 325 IPR000504 GO:0003723
Lja4g1496 416 CDD RRM3_TIA1_like 251 325 - -
Lja4g1496 416 SUPERFAMILY RNA-binding domain, RBD 242 330 IPR035979 GO:0003676
Lja4g1496 416 SUPERFAMILY RNA-binding domain, RBD 124 215 IPR035979 GO:0003676
Lja4g1496 416 Gene3D - 39 125 IPR012677 -
Lja4g1496 416 Gene3D - 230 329 IPR012677 -
Lja4g1496 416 Gene3D - 126 227 IPR012677 -
Lja4g1496 416 SUPERFAMILY RNA-binding domain, RBD 26 126 IPR035979 GO:0003676
Lja4g1496 416 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 4 412 - -
Lja4g1496 416 SMART rrm1_1 47 116 IPR000504 GO:0003723
Lja4g1496 416 SMART rrm1_1 252 321 IPR000504 GO:0003723
Lja4g1496 416 SMART rrm1_1 132 205 IPR000504 GO:0003723
Lja4g1496 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 412 - -
Lja4g1496 416 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1496 Lja-Chr4 13844756 13849923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1496 47 319 Eukaryotic Initiation Factors Gene Family AT3G16380 27.986 2.10e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1496 K13201 - gmx:100813736 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1496 4 13844756 13849923 Lja4g1496 4 13844756 13849923 ECH